miRNA display CGI


Results 21 - 40 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26696 5' -61.7 NC_005808.1 + 12274 0.71 0.128771
Target:  5'- gUCCuggGCggGuUGCuGGCCCAGCGUGCc -3'
miRNA:   3'- -AGGua-CGagC-GCGuCCGGGUCGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 7770 0.71 0.13235
Target:  5'- aUCCAgGCUCGCGCcuucGCCCuGCGagGCg -3'
miRNA:   3'- -AGGUaCGAGCGCGuc--CGGGuCGCg-CG- -5'
26696 5' -61.7 NC_005808.1 + 6482 0.71 0.13235
Target:  5'- -gCAcGC-CGCGCAGGCCCGcauucaCGCGCu -3'
miRNA:   3'- agGUaCGaGCGCGUCCGGGUc-----GCGCG- -5'
26696 5' -61.7 NC_005808.1 + 9396 0.71 0.136021
Target:  5'- gCCAcUGCaugUCGCGCAGGCC--GCGgGCu -3'
miRNA:   3'- aGGU-ACG---AGCGCGUCCGGguCGCgCG- -5'
26696 5' -61.7 NC_005808.1 + 35416 0.71 0.139786
Target:  5'- gUCCcgGCU-GCGUcaGGGCgUCAGCGCGUc -3'
miRNA:   3'- -AGGuaCGAgCGCG--UCCG-GGUCGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 18144 0.7 0.151659
Target:  5'- gCCcgGCUCGCGCAGcuugccgaaauaGCCCuguuucAGUGCGa -3'
miRNA:   3'- aGGuaCGAGCGCGUC------------CGGG------UCGCGCg -5'
26696 5' -61.7 NC_005808.1 + 35950 0.7 0.155816
Target:  5'- aCCAUGa--GCGCGgacacuccGGCCaAGCGCGCg -3'
miRNA:   3'- aGGUACgagCGCGU--------CCGGgUCGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 24511 0.7 0.155816
Target:  5'- gUCCugGUUCGCGCcggcuucggcGGCCCAGCaCGCa -3'
miRNA:   3'- -AGGuaCGAGCGCGu---------CCGGGUCGcGCG- -5'
26696 5' -61.7 NC_005808.1 + 13230 0.7 0.173492
Target:  5'- gUCCGaggGCUgGgGCaAGGCcaCCGGCGCGUg -3'
miRNA:   3'- -AGGUa--CGAgCgCG-UCCG--GGUCGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 14309 0.7 0.173492
Target:  5'- cUUCAaGUUCuGCGCcGuGuCCCAGCGCGCg -3'
miRNA:   3'- -AGGUaCGAG-CGCGuC-C-GGGUCGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 18518 0.7 0.173492
Target:  5'- cCCGUGCccCGCGCGGucGCCgCuacuGUGCGCg -3'
miRNA:   3'- aGGUACGa-GCGCGUC--CGG-Gu---CGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 11356 0.7 0.173492
Target:  5'- gCCcgGCUCGUaGCuGGgCC-GCGCGCc -3'
miRNA:   3'- aGGuaCGAGCG-CGuCCgGGuCGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 27832 0.69 0.182984
Target:  5'- ---cUGCcCGCGguGGCgCCGGCcGCGCc -3'
miRNA:   3'- agguACGaGCGCguCCG-GGUCG-CGCG- -5'
26696 5' -61.7 NC_005808.1 + 29401 0.69 0.184937
Target:  5'- -aCAUGCagGCGUacaacgccggccaagGGcGCCCAGCGCGg -3'
miRNA:   3'- agGUACGagCGCG---------------UC-CGGGUCGCGCg -5'
26696 5' -61.7 NC_005808.1 + 32586 0.69 0.187901
Target:  5'- aCCAgg---GCGgGGGCCgGGCGCGCg -3'
miRNA:   3'- aGGUacgagCGCgUCCGGgUCGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 22044 0.69 0.192934
Target:  5'- gCCAUGUugcggucgUCGCGCuugcucGGGUcgcggUCGGCGCGCg -3'
miRNA:   3'- aGGUACG--------AGCGCG------UCCG-----GGUCGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 6619 0.69 0.192934
Target:  5'- aCCA-GCggGCGCGuGGCgCuGCGCGCg -3'
miRNA:   3'- aGGUaCGagCGCGU-CCGgGuCGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 17684 0.69 0.198084
Target:  5'- aUCCA-GCccaagUCGCGCAcGUucauuCCGGCGCGCg -3'
miRNA:   3'- -AGGUaCG-----AGCGCGUcCG-----GGUCGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 16837 0.69 0.203354
Target:  5'- aUCguUGC-CGCcgcccaGCAGcgcGCCCAGCGUGCu -3'
miRNA:   3'- -AGguACGaGCG------CGUC---CGGGUCGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 19467 0.69 0.208745
Target:  5'- gCCAUaguucaGCUUGCGcCAGGUgCCGGUGgGCa -3'
miRNA:   3'- aGGUA------CGAGCGC-GUCCG-GGUCGCgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.