miRNA display CGI


Results 41 - 60 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26696 5' -61.7 NC_005808.1 + 22665 0.69 0.208745
Target:  5'- aUCCAgcuuucgcGCUCgguGCGCAGuugccCCCAGCGCGa -3'
miRNA:   3'- -AGGUa-------CGAG---CGCGUCc----GGGUCGCGCg -5'
26696 5' -61.7 NC_005808.1 + 15135 0.69 0.208745
Target:  5'- -gCGUGCgcggCGCGCuGGCauaCCAGCGC-Ca -3'
miRNA:   3'- agGUACGa---GCGCGuCCG---GGUCGCGcG- -5'
26696 5' -61.7 NC_005808.1 + 5617 0.68 0.214259
Target:  5'- --gGUGCguuUCGCGCGuGGCgCGGCGCaGCu -3'
miRNA:   3'- aggUACG---AGCGCGU-CCGgGUCGCG-CG- -5'
26696 5' -61.7 NC_005808.1 + 10843 0.68 0.219897
Target:  5'- gUCUugagGUGgUCGaGCAGGCCCuGCGUGg -3'
miRNA:   3'- -AGG----UACgAGCgCGUCCGGGuCGCGCg -5'
26696 5' -61.7 NC_005808.1 + 366 0.68 0.223919
Target:  5'- aUCCggguGUGCUUggccugccgauugaGCGC-GG-CCAGCGCGCg -3'
miRNA:   3'- -AGG----UACGAG--------------CGCGuCCgGGUCGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 9685 0.68 0.225661
Target:  5'- gCCA-GC-CGUGCAGGCCgUGGC-CGCa -3'
miRNA:   3'- aGGUaCGaGCGCGUCCGG-GUCGcGCG- -5'
26696 5' -61.7 NC_005808.1 + 18820 0.68 0.225661
Target:  5'- aUCCAUcuucguagccGCg-GCGCAucGGCCCGGUgGCGCc -3'
miRNA:   3'- -AGGUA----------CGagCGCGU--CCGGGUCG-CGCG- -5'
26696 5' -61.7 NC_005808.1 + 21900 0.68 0.231553
Target:  5'- cCCGUGcCUCGuCGUccaGCCCAuagaguGCGCGCa -3'
miRNA:   3'- aGGUAC-GAGC-GCGuc-CGGGU------CGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 23086 0.68 0.236967
Target:  5'- -aCAUGCUCGCcccgacgccaacgGCGGcGCCCacGGCGacaGCg -3'
miRNA:   3'- agGUACGAGCG-------------CGUC-CGGG--UCGCg--CG- -5'
26696 5' -61.7 NC_005808.1 + 24063 0.68 0.236967
Target:  5'- uUCCAUGC-CGCGCAcaguagcGGCgaCC-GCGCGg -3'
miRNA:   3'- -AGGUACGaGCGCGU-------CCG--GGuCGCGCg -5'
26696 5' -61.7 NC_005808.1 + 24436 0.68 0.236967
Target:  5'- gUCgGUGC-CGCGCGcGGCCuCGGCGacauugaCGCc -3'
miRNA:   3'- -AGgUACGaGCGCGU-CCGG-GUCGC-------GCG- -5'
26696 5' -61.7 NC_005808.1 + 11517 0.68 0.237575
Target:  5'- gCCugcGCUgGCGUgAGGCCCugcgAGCGgGCa -3'
miRNA:   3'- aGGua-CGAgCGCG-UCCGGG----UCGCgCG- -5'
26696 5' -61.7 NC_005808.1 + 14625 0.68 0.237575
Target:  5'- uUCCAUGCUU---CcGGCgCCGGUGCGCa -3'
miRNA:   3'- -AGGUACGAGcgcGuCCG-GGUCGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 26528 0.68 0.237575
Target:  5'- aUCUAcgGCgccgCGCGCGGcGgCCAcGUGCGCg -3'
miRNA:   3'- -AGGUa-CGa---GCGCGUC-CgGGU-CGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 15872 0.68 0.237575
Target:  5'- ----cGCUgGCGguGGCCCGGCuuUGCa -3'
miRNA:   3'- agguaCGAgCGCguCCGGGUCGc-GCG- -5'
26696 5' -61.7 NC_005808.1 + 4663 0.68 0.243726
Target:  5'- -aCA-GgUUGUugGCGGGCaCCAGCGCGCc -3'
miRNA:   3'- agGUaCgAGCG--CGUCCG-GGUCGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 8837 0.68 0.243726
Target:  5'- gCCA-GC-CGCaacGCGGG-CCAGCGCGUu -3'
miRNA:   3'- aGGUaCGaGCG---CGUCCgGGUCGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 39360 0.67 0.249376
Target:  5'- gCC-UGCUCGgGCAGGUCgaauuauucaucgUGGCGgGCa -3'
miRNA:   3'- aGGuACGAGCgCGUCCGG-------------GUCGCgCG- -5'
26696 5' -61.7 NC_005808.1 + 5143 0.67 0.25001
Target:  5'- -aCGUGC-CGCGCAGGCggCCGuCGCuGCu -3'
miRNA:   3'- agGUACGaGCGCGUCCG--GGUcGCG-CG- -5'
26696 5' -61.7 NC_005808.1 + 9851 0.67 0.256427
Target:  5'- gUUUcgGCgUCGaugaGCGuGGCaCCGGCGCGCu -3'
miRNA:   3'- -AGGuaCG-AGCg---CGU-CCG-GGUCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.