miRNA display CGI


Results 41 - 60 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26696 5' -61.7 NC_005808.1 + 12457 0.67 0.276487
Target:  5'- gUCCGacGCg-GUGCAGGCCggCGGCGUGUu -3'
miRNA:   3'- -AGGUa-CGagCGCGUCCGG--GUCGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 13001 0.66 0.31267
Target:  5'- gCCGUuCUCGUaCAGGCCgcgCAGCGCa- -3'
miRNA:   3'- aGGUAcGAGCGcGUCCGG---GUCGCGcg -5'
26696 5' -61.7 NC_005808.1 + 13230 0.7 0.173492
Target:  5'- gUCCGaggGCUgGgGCaAGGCcaCCGGCGCGUg -3'
miRNA:   3'- -AGGUa--CGAgCgCG-UCCG--GGUCGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 13820 0.67 0.262978
Target:  5'- aCCAggGCaaGCGCGacGCCguGCGCGCc -3'
miRNA:   3'- aGGUa-CGagCGCGUc-CGGguCGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 14309 0.7 0.173492
Target:  5'- cUUCAaGUUCuGCGCcGuGuCCCAGCGCGCg -3'
miRNA:   3'- -AGGUaCGAG-CGCGuC-C-GGGUCGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 14625 0.68 0.237575
Target:  5'- uUCCAUGCUU---CcGGCgCCGGUGCGCa -3'
miRNA:   3'- -AGGUACGAGcgcGuCCG-GGUCGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 15135 0.69 0.208745
Target:  5'- -gCGUGCgcggCGCGCuGGCauaCCAGCGC-Ca -3'
miRNA:   3'- agGUACGa---GCGCGuCCG---GGUCGCGcG- -5'
26696 5' -61.7 NC_005808.1 + 15138 0.73 0.103209
Target:  5'- cCCAUGCUgGCgGCGGaugcGCCCAGgGCGa -3'
miRNA:   3'- aGGUACGAgCG-CGUC----CGGGUCgCGCg -5'
26696 5' -61.7 NC_005808.1 + 15168 0.67 0.276487
Target:  5'- gCC-UGCggccgccgggCGCGguGcGCCaGGCGCGCg -3'
miRNA:   3'- aGGuACGa---------GCGCguC-CGGgUCGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 15850 0.66 0.290544
Target:  5'- gUCCGUG-UCGUGCuGGUgCCA-CGCGCc -3'
miRNA:   3'- -AGGUACgAGCGCGuCCG-GGUcGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 15872 0.68 0.237575
Target:  5'- ----cGCUgGCGguGGCCCGGCuuUGCa -3'
miRNA:   3'- agguaCGAgCGCguCCGGGUCGc-GCG- -5'
26696 5' -61.7 NC_005808.1 + 15878 0.67 0.262978
Target:  5'- aUCUGuUGCUCGgGCacguaggugAGGCCCAGCaGCu- -3'
miRNA:   3'- -AGGU-ACGAGCgCG---------UCCGGGUCG-CGcg -5'
26696 5' -61.7 NC_005808.1 + 16054 0.75 0.067658
Target:  5'- gCCA-GUUCGCGCAcguGGCCgCcGCGCGCg -3'
miRNA:   3'- aGGUaCGAGCGCGU---CCGG-GuCGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 16837 0.69 0.203354
Target:  5'- aUCguUGC-CGCcgcccaGCAGcgcGCCCAGCGUGCu -3'
miRNA:   3'- -AGguACGaGCG------CGUC---CGGGUCGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 17063 0.67 0.283446
Target:  5'- aUCCuucacCUCGCGCacgaAGGCgaagCCGGCGCGg -3'
miRNA:   3'- -AGGuac--GAGCGCG----UCCG----GGUCGCGCg -5'
26696 5' -61.7 NC_005808.1 + 17280 0.67 0.283446
Target:  5'- aUCCcgGCgacgagCGCcggugGCAGGgCCGGC-CGCa -3'
miRNA:   3'- -AGGuaCGa-----GCG-----CGUCCgGGUCGcGCG- -5'
26696 5' -61.7 NC_005808.1 + 17684 0.69 0.198084
Target:  5'- aUCCA-GCccaagUCGCGCAcGUucauuCCGGCGCGCg -3'
miRNA:   3'- -AGGUaCG-----AGCGCGUcCG-----GGUCGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 18144 0.7 0.151659
Target:  5'- gCCcgGCUCGCGCAGcuugccgaaauaGCCCuguuucAGUGCGa -3'
miRNA:   3'- aGGuaCGAGCGCGUC------------CGGG------UCGCGCg -5'
26696 5' -61.7 NC_005808.1 + 18413 0.74 0.089742
Target:  5'- -aCGUGCUCGCGCucauggacacGCCgaAGCGCGCa -3'
miRNA:   3'- agGUACGAGCGCGuc--------CGGg-UCGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 18448 0.67 0.269664
Target:  5'- gCCGU-CgagGCGCuGGGCCaGGCGCGCa -3'
miRNA:   3'- aGGUAcGag-CGCG-UCCGGgUCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.