miRNA display CGI


Results 41 - 60 of 106 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26696 5' -61.7 NC_005808.1 + 18448 0.67 0.269664
Target:  5'- gCCGU-CgagGCGCuGGGCCaGGCGCGCa -3'
miRNA:   3'- aGGUAcGag-CGCG-UCCGGgUCGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 37912 0.67 0.269664
Target:  5'- gCCAUuCUCGC-C-GGCuauCCGGCGCGCu -3'
miRNA:   3'- aGGUAcGAGCGcGuCCG---GGUCGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 5732 0.67 0.276487
Target:  5'- --gAUG-UCGCaCAGaucGCCCAGCGCGCc -3'
miRNA:   3'- aggUACgAGCGcGUC---CGGGUCGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 12457 0.67 0.276487
Target:  5'- gUCCGacGCg-GUGCAGGCCggCGGCGUGUu -3'
miRNA:   3'- -AGGUa-CGagCGCGUCCGG--GUCGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 15168 0.67 0.276487
Target:  5'- gCC-UGCggccgccgggCGCGguGcGCCaGGCGCGCg -3'
miRNA:   3'- aGGuACGa---------GCGCguC-CGGgUCGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 34434 0.67 0.276487
Target:  5'- aUCCggGCgcaCGCGCAGGgaCgCAGCGC-Cg -3'
miRNA:   3'- -AGGuaCGa--GCGCGUCCg-G-GUCGCGcG- -5'
26696 5' -61.7 NC_005808.1 + 42410 0.67 0.276487
Target:  5'- gCCcgGCagCGUGaCGGuGCCCAGCgacaccgggGCGCa -3'
miRNA:   3'- aGGuaCGa-GCGC-GUC-CGGGUCG---------CGCG- -5'
26696 5' -61.7 NC_005808.1 + 28249 0.67 0.281344
Target:  5'- uUCCAgGacaccgCGaaccaGCAGGCCCggcaguucagccaaGGCGCGCg -3'
miRNA:   3'- -AGGUaCga----GCg----CGUCCGGG--------------UCGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 17280 0.67 0.283446
Target:  5'- aUCCcgGCgacgagCGCcggugGCAGGgCCGGC-CGCa -3'
miRNA:   3'- -AGGuaCGa-----GCG-----CGUCCgGGUCGcGCG- -5'
26696 5' -61.7 NC_005808.1 + 10843 0.68 0.219897
Target:  5'- gUCUugagGUGgUCGaGCAGGCCCuGCGUGg -3'
miRNA:   3'- -AGG----UACgAGCgCGUCCGGGuCGCGCg -5'
26696 5' -61.7 NC_005808.1 + 23086 0.68 0.236967
Target:  5'- -aCAUGCUCGCcccgacgccaacgGCGGcGCCCacGGCGacaGCg -3'
miRNA:   3'- agGUACGAGCG-------------CGUC-CGGG--UCGCg--CG- -5'
26696 5' -61.7 NC_005808.1 + 24063 0.68 0.236967
Target:  5'- uUCCAUGC-CGCGCAcaguagcGGCgaCC-GCGCGg -3'
miRNA:   3'- -AGGUACGaGCGCGU-------CCG--GGuCGCGCg -5'
26696 5' -61.7 NC_005808.1 + 24436 0.68 0.236967
Target:  5'- gUCgGUGC-CGCGCGcGGCCuCGGCGacauugaCGCc -3'
miRNA:   3'- -AGgUACGaGCGCGU-CCGG-GUCGC-------GCG- -5'
26696 5' -61.7 NC_005808.1 + 11517 0.68 0.237575
Target:  5'- gCCugcGCUgGCGUgAGGCCCugcgAGCGgGCa -3'
miRNA:   3'- aGGua-CGAgCGCG-UCCGGG----UCGCgCG- -5'
26696 5' -61.7 NC_005808.1 + 14625 0.68 0.237575
Target:  5'- uUCCAUGCUU---CcGGCgCCGGUGCGCa -3'
miRNA:   3'- -AGGUACGAGcgcGuCCG-GGUCGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 4663 0.68 0.243726
Target:  5'- -aCA-GgUUGUugGCGGGCaCCAGCGCGCc -3'
miRNA:   3'- agGUaCgAGCG--CGUCCG-GGUCGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 8837 0.68 0.243726
Target:  5'- gCCA-GC-CGCaacGCGGG-CCAGCGCGUu -3'
miRNA:   3'- aGGUaCGaGCG---CGUCCgGGUCGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 5617 0.68 0.214259
Target:  5'- --gGUGCguuUCGCGCGuGGCgCGGCGCaGCu -3'
miRNA:   3'- aggUACG---AGCGCGU-CCGgGUCGCG-CG- -5'
26696 5' -61.7 NC_005808.1 + 366 0.68 0.223919
Target:  5'- aUCCggguGUGCUUggccugccgauugaGCGC-GG-CCAGCGCGCg -3'
miRNA:   3'- -AGG----UACGAG--------------CGCGuCCgGGUCGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 9685 0.68 0.225661
Target:  5'- gCCA-GC-CGUGCAGGCCgUGGC-CGCa -3'
miRNA:   3'- aGGUaCGaGCGCGUCCGG-GUCGcGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.