miRNA display CGI


Results 21 - 40 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26696 5' -61.7 NC_005808.1 + 36001 0.66 0.290544
Target:  5'- gCCAUGCUCuacgugGUGCcGGCCguGCuGgGCu -3'
miRNA:   3'- aGGUACGAG------CGCGuCCGGguCG-CgCG- -5'
26696 5' -61.7 NC_005808.1 + 9201 0.66 0.296322
Target:  5'- gCCGUGCcgcgauagccaGCGguGGCCguGC-CGCg -3'
miRNA:   3'- aGGUACGag---------CGCguCCGGguCGcGCG- -5'
26696 5' -61.7 NC_005808.1 + 9203 0.66 0.328117
Target:  5'- gCC-UGCUCggcgGCGCGGcGCacguucugCGGCGCGCc -3'
miRNA:   3'- aGGuACGAG----CGCGUC-CGg-------GUCGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 9345 0.66 0.296322
Target:  5'- gCCGUGCcgcgauagccaGCGguGGCCguGC-CGCg -3'
miRNA:   3'- aGGUACGag---------CGCguCCGGguCGcGCG- -5'
26696 5' -61.7 NC_005808.1 + 19173 0.66 0.320324
Target:  5'- aUCCcgGCcggCGuCGCAcugaCCGGCGCGCu -3'
miRNA:   3'- -AGGuaCGa--GC-GCGUccg-GGUCGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 20083 0.66 0.31267
Target:  5'- -gCGUGCUCGCuGCGGGgaugaUGGCGgGCa -3'
miRNA:   3'- agGUACGAGCG-CGUCCgg---GUCGCgCG- -5'
26696 5' -61.7 NC_005808.1 + 6693 0.66 0.31267
Target:  5'- gCCA---UCGUGCAGGCacaccuuguCCugGGCGCGCa -3'
miRNA:   3'- aGGUacgAGCGCGUCCG---------GG--UCGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 35880 0.66 0.327332
Target:  5'- gCCGUGCUCaaGCAGaugcgcGCCCaggacaaGGUGUGCc -3'
miRNA:   3'- aGGUACGAGcgCGUC------CGGG-------UCGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 8238 0.66 0.320324
Target:  5'- gCCGUcagcaGCUUGCGCuucaagcGGCCCAG-GUGUu -3'
miRNA:   3'- aGGUA-----CGAGCGCGu------CCGGGUCgCGCG- -5'
26696 5' -61.7 NC_005808.1 + 5143 0.67 0.25001
Target:  5'- -aCGUGC-CGCGCAGGCggCCGuCGCuGCu -3'
miRNA:   3'- agGUACGaGCGCGUCCG--GGUcGCG-CG- -5'
26696 5' -61.7 NC_005808.1 + 13820 0.67 0.262978
Target:  5'- aCCAggGCaaGCGCGacGCCguGCGCGCc -3'
miRNA:   3'- aGGUa-CGagCGCGUc-CGGguCGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 27396 0.67 0.274425
Target:  5'- aUCCAUGUcgcucuuguagucgUCGCGC--GCCUGGCGCa- -3'
miRNA:   3'- -AGGUACG--------------AGCGCGucCGGGUCGCGcg -5'
26696 5' -61.7 NC_005808.1 + 17280 0.67 0.283446
Target:  5'- aUCCcgGCgacgagCGCcggugGCAGGgCCGGC-CGCa -3'
miRNA:   3'- -AGGuaCGa-----GCG-----CGUCCgGGUCGcGCG- -5'
26696 5' -61.7 NC_005808.1 + 28249 0.67 0.281344
Target:  5'- uUCCAgGacaccgCGaaccaGCAGGCCCggcaguucagccaaGGCGCGCg -3'
miRNA:   3'- -AGGUaCga----GCg----CGUCCGGG--------------UCGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 5732 0.67 0.276487
Target:  5'- --gAUG-UCGCaCAGaucGCCCAGCGCGCc -3'
miRNA:   3'- aggUACgAGCGcGUC---CGGGUCGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 18448 0.67 0.269664
Target:  5'- gCCGU-CgagGCGCuGGGCCaGGCGCGCa -3'
miRNA:   3'- aGGUAcGag-CGCG-UCCGGgUCGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 37912 0.67 0.269664
Target:  5'- gCCAUuCUCGC-C-GGCuauCCGGCGCGCu -3'
miRNA:   3'- aGGUAcGAGCGcGuCCG---GGUCGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 9851 0.67 0.256427
Target:  5'- gUUUcgGCgUCGaugaGCGuGGCaCCGGCGCGCu -3'
miRNA:   3'- -AGGuaCG-AGCg---CGU-CCG-GGUCGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 15878 0.67 0.262978
Target:  5'- aUCUGuUGCUCGgGCacguaggugAGGCCCAGCaGCu- -3'
miRNA:   3'- -AGGU-ACGAGCgCG---------UCCGGGUCG-CGcg -5'
26696 5' -61.7 NC_005808.1 + 21151 0.67 0.262978
Target:  5'- gCCGUGUcCGCGCccuGGUucaaCAGCGCGg -3'
miRNA:   3'- aGGUACGaGCGCGu--CCGg---GUCGCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.