miRNA display CGI


Results 21 - 40 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26696 5' -61.7 NC_005808.1 + 8182 0.66 0.2884
Target:  5'- cCCGgaUGCugccggcgauuucaUCGCGCAcGGCCUcguAGuCGCGCu -3'
miRNA:   3'- aGGU--ACG--------------AGCGCGU-CCGGG---UC-GCGCG- -5'
26696 5' -61.7 NC_005808.1 + 8238 0.66 0.320324
Target:  5'- gCCGUcagcaGCUUGCGCuucaagcGGCCCAG-GUGUu -3'
miRNA:   3'- aGGUA-----CGAGCGCGu------CCGGGUCgCGCG- -5'
26696 5' -61.7 NC_005808.1 + 8837 0.68 0.243726
Target:  5'- gCCA-GC-CGCaacGCGGG-CCAGCGCGUu -3'
miRNA:   3'- aGGUaCGaGCG---CGUCCgGGUCGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 9009 0.66 0.296322
Target:  5'- gCCGUGCcggauucgccaGCGguGGCCguGC-CGCg -3'
miRNA:   3'- aGGUACGag---------CGCguCCGGguCGcGCG- -5'
26696 5' -61.7 NC_005808.1 + 9057 0.66 0.296322
Target:  5'- gCCGUGCcggauucgccaGCGguGGCCguGC-CGCg -3'
miRNA:   3'- aGGUACGag---------CGCguCCGGguCGcGCG- -5'
26696 5' -61.7 NC_005808.1 + 9105 0.66 0.296322
Target:  5'- gCCGUGCcgcgauagccaGCGguGGCCguGC-CGCg -3'
miRNA:   3'- aGGUACGag---------CGCguCCGGguCGcGCG- -5'
26696 5' -61.7 NC_005808.1 + 9153 0.66 0.296322
Target:  5'- gCCGUGCcgcgauagccaGCGguGGCCguGC-CGCg -3'
miRNA:   3'- aGGUACGag---------CGCguCCGGguCGcGCG- -5'
26696 5' -61.7 NC_005808.1 + 9201 0.66 0.296322
Target:  5'- gCCGUGCcgcgauagccaGCGguGGCCguGC-CGCg -3'
miRNA:   3'- aGGUACGag---------CGCguCCGGguCGcGCG- -5'
26696 5' -61.7 NC_005808.1 + 9203 0.66 0.328117
Target:  5'- gCC-UGCUCggcgGCGCGGcGCacguucugCGGCGCGCc -3'
miRNA:   3'- aGGuACGAG----CGCGUC-CGg-------GUCGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 9249 0.66 0.296322
Target:  5'- gCCGUGCcgcgauagccaGCGguGGCCguGC-CGCg -3'
miRNA:   3'- aGGUACGag---------CGCguCCGGguCGcGCG- -5'
26696 5' -61.7 NC_005808.1 + 9297 0.66 0.296322
Target:  5'- gCCGUGCcgcgauagccaGCGguGGCCguGC-CGCg -3'
miRNA:   3'- aGGUACGag---------CGCguCCGGguCGcGCG- -5'
26696 5' -61.7 NC_005808.1 + 9345 0.66 0.296322
Target:  5'- gCCGUGCcgcgauagccaGCGguGGCCguGC-CGCg -3'
miRNA:   3'- aGGUACGag---------CGCguCCGGguCGcGCG- -5'
26696 5' -61.7 NC_005808.1 + 9396 0.71 0.136021
Target:  5'- gCCAcUGCaugUCGCGCAGGCC--GCGgGCu -3'
miRNA:   3'- aGGU-ACG---AGCGCGUCCGGguCGCgCG- -5'
26696 5' -61.7 NC_005808.1 + 9685 0.68 0.225661
Target:  5'- gCCA-GC-CGUGCAGGCCgUGGC-CGCa -3'
miRNA:   3'- aGGUaCGaGCGCGUCCGG-GUCGcGCG- -5'
26696 5' -61.7 NC_005808.1 + 9851 0.67 0.256427
Target:  5'- gUUUcgGCgUCGaugaGCGuGGCaCCGGCGCGCu -3'
miRNA:   3'- -AGGuaCG-AGCg---CGU-CCG-GGUCGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 10843 0.68 0.219897
Target:  5'- gUCUugagGUGgUCGaGCAGGCCCuGCGUGg -3'
miRNA:   3'- -AGG----UACgAGCgCGUCCGGGuCGCGCg -5'
26696 5' -61.7 NC_005808.1 + 11356 0.7 0.173492
Target:  5'- gCCcgGCUCGUaGCuGGgCC-GCGCGCc -3'
miRNA:   3'- aGGuaCGAGCG-CGuCCgGGuCGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 11517 0.68 0.237575
Target:  5'- gCCugcGCUgGCGUgAGGCCCugcgAGCGgGCa -3'
miRNA:   3'- aGGua-CGAgCGCG-UCCGGG----UCGCgCG- -5'
26696 5' -61.7 NC_005808.1 + 11548 0.67 0.256427
Target:  5'- gUUCggGCcuUCGCGCAcguuGGCCC-GCGCGa -3'
miRNA:   3'- -AGGuaCG--AGCGCGU----CCGGGuCGCGCg -5'
26696 5' -61.7 NC_005808.1 + 12274 0.71 0.128771
Target:  5'- gUCCuggGCggGuUGCuGGCCCAGCGUGCc -3'
miRNA:   3'- -AGGua-CGagC-GCGuCCGGGUCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.