miRNA display CGI


Results 41 - 60 of 106 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26696 5' -61.7 NC_005808.1 + 18448 0.67 0.269664
Target:  5'- gCCGU-CgagGCGCuGGGCCaGGCGCGCa -3'
miRNA:   3'- aGGUAcGag-CGCG-UCCGGgUCGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 37912 0.67 0.269664
Target:  5'- gCCAUuCUCGC-C-GGCuauCCGGCGCGCu -3'
miRNA:   3'- aGGUAcGAGCGcGuCCG---GGUCGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 13820 0.67 0.262978
Target:  5'- aCCAggGCaaGCGCGacGCCguGCGCGCc -3'
miRNA:   3'- aGGUa-CGagCGCGUc-CGGguCGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 21151 0.67 0.262978
Target:  5'- gCCGUGUcCGCGCccuGGUucaaCAGCGCGg -3'
miRNA:   3'- aGGUACGaGCGCGu--CCGg---GUCGCGCg -5'
26696 5' -61.7 NC_005808.1 + 15878 0.67 0.262978
Target:  5'- aUCUGuUGCUCGgGCacguaggugAGGCCCAGCaGCu- -3'
miRNA:   3'- -AGGU-ACGAGCgCG---------UCCGGGUCG-CGcg -5'
26696 5' -61.7 NC_005808.1 + 11548 0.67 0.256427
Target:  5'- gUUCggGCcuUCGCGCAcguuGGCCC-GCGCGa -3'
miRNA:   3'- -AGGuaCG--AGCGCGU----CCGGGuCGCGCg -5'
26696 5' -61.7 NC_005808.1 + 9851 0.67 0.256427
Target:  5'- gUUUcgGCgUCGaugaGCGuGGCaCCGGCGCGCu -3'
miRNA:   3'- -AGGuaCG-AGCg---CGU-CCG-GGUCGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 5143 0.67 0.25001
Target:  5'- -aCGUGC-CGCGCAGGCggCCGuCGCuGCu -3'
miRNA:   3'- agGUACGaGCGCGUCCG--GGUcGCG-CG- -5'
26696 5' -61.7 NC_005808.1 + 39360 0.67 0.249376
Target:  5'- gCC-UGCUCGgGCAGGUCgaauuauucaucgUGGCGgGCa -3'
miRNA:   3'- aGGuACGAGCgCGUCCGG-------------GUCGCgCG- -5'
26696 5' -61.7 NC_005808.1 + 8837 0.68 0.243726
Target:  5'- gCCA-GC-CGCaacGCGGG-CCAGCGCGUu -3'
miRNA:   3'- aGGUaCGaGCG---CGUCCgGGUCGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 4663 0.68 0.243726
Target:  5'- -aCA-GgUUGUugGCGGGCaCCAGCGCGCc -3'
miRNA:   3'- agGUaCgAGCG--CGUCCG-GGUCGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 15872 0.68 0.237575
Target:  5'- ----cGCUgGCGguGGCCCGGCuuUGCa -3'
miRNA:   3'- agguaCGAgCGCguCCGGGUCGc-GCG- -5'
26696 5' -61.7 NC_005808.1 + 14625 0.68 0.237575
Target:  5'- uUCCAUGCUU---CcGGCgCCGGUGCGCa -3'
miRNA:   3'- -AGGUACGAGcgcGuCCG-GGUCGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 11517 0.68 0.237575
Target:  5'- gCCugcGCUgGCGUgAGGCCCugcgAGCGgGCa -3'
miRNA:   3'- aGGua-CGAgCGCG-UCCGGG----UCGCgCG- -5'
26696 5' -61.7 NC_005808.1 + 26528 0.68 0.237575
Target:  5'- aUCUAcgGCgccgCGCGCGGcGgCCAcGUGCGCg -3'
miRNA:   3'- -AGGUa-CGa---GCGCGUC-CgGGU-CGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 23086 0.68 0.236967
Target:  5'- -aCAUGCUCGCcccgacgccaacgGCGGcGCCCacGGCGacaGCg -3'
miRNA:   3'- agGUACGAGCG-------------CGUC-CGGG--UCGCg--CG- -5'
26696 5' -61.7 NC_005808.1 + 24436 0.68 0.236967
Target:  5'- gUCgGUGC-CGCGCGcGGCCuCGGCGacauugaCGCc -3'
miRNA:   3'- -AGgUACGaGCGCGU-CCGG-GUCGC-------GCG- -5'
26696 5' -61.7 NC_005808.1 + 24063 0.68 0.236967
Target:  5'- uUCCAUGC-CGCGCAcaguagcGGCgaCC-GCGCGg -3'
miRNA:   3'- -AGGUACGaGCGCGU-------CCG--GGuCGCGCg -5'
26696 5' -61.7 NC_005808.1 + 21900 0.68 0.231553
Target:  5'- cCCGUGcCUCGuCGUccaGCCCAuagaguGCGCGCa -3'
miRNA:   3'- aGGUAC-GAGC-GCGuc-CGGGU------CGCGCG- -5'
26696 5' -61.7 NC_005808.1 + 9685 0.68 0.225661
Target:  5'- gCCA-GC-CGUGCAGGCCgUGGC-CGCa -3'
miRNA:   3'- aGGUaCGaGCGCGUCCGG-GUCGcGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.