Results 41 - 60 of 106 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26696 | 5' | -61.7 | NC_005808.1 | + | 18448 | 0.67 | 0.269664 |
Target: 5'- gCCGU-CgagGCGCuGGGCCaGGCGCGCa -3' miRNA: 3'- aGGUAcGag-CGCG-UCCGGgUCGCGCG- -5' |
|||||||
26696 | 5' | -61.7 | NC_005808.1 | + | 37912 | 0.67 | 0.269664 |
Target: 5'- gCCAUuCUCGC-C-GGCuauCCGGCGCGCu -3' miRNA: 3'- aGGUAcGAGCGcGuCCG---GGUCGCGCG- -5' |
|||||||
26696 | 5' | -61.7 | NC_005808.1 | + | 15878 | 0.67 | 0.262978 |
Target: 5'- aUCUGuUGCUCGgGCacguaggugAGGCCCAGCaGCu- -3' miRNA: 3'- -AGGU-ACGAGCgCG---------UCCGGGUCG-CGcg -5' |
|||||||
26696 | 5' | -61.7 | NC_005808.1 | + | 21151 | 0.67 | 0.262978 |
Target: 5'- gCCGUGUcCGCGCccuGGUucaaCAGCGCGg -3' miRNA: 3'- aGGUACGaGCGCGu--CCGg---GUCGCGCg -5' |
|||||||
26696 | 5' | -61.7 | NC_005808.1 | + | 13820 | 0.67 | 0.262978 |
Target: 5'- aCCAggGCaaGCGCGacGCCguGCGCGCc -3' miRNA: 3'- aGGUa-CGagCGCGUc-CGGguCGCGCG- -5' |
|||||||
26696 | 5' | -61.7 | NC_005808.1 | + | 9851 | 0.67 | 0.256427 |
Target: 5'- gUUUcgGCgUCGaugaGCGuGGCaCCGGCGCGCu -3' miRNA: 3'- -AGGuaCG-AGCg---CGU-CCG-GGUCGCGCG- -5' |
|||||||
26696 | 5' | -61.7 | NC_005808.1 | + | 11548 | 0.67 | 0.256427 |
Target: 5'- gUUCggGCcuUCGCGCAcguuGGCCC-GCGCGa -3' miRNA: 3'- -AGGuaCG--AGCGCGU----CCGGGuCGCGCg -5' |
|||||||
26696 | 5' | -61.7 | NC_005808.1 | + | 5143 | 0.67 | 0.25001 |
Target: 5'- -aCGUGC-CGCGCAGGCggCCGuCGCuGCu -3' miRNA: 3'- agGUACGaGCGCGUCCG--GGUcGCG-CG- -5' |
|||||||
26696 | 5' | -61.7 | NC_005808.1 | + | 39360 | 0.67 | 0.249376 |
Target: 5'- gCC-UGCUCGgGCAGGUCgaauuauucaucgUGGCGgGCa -3' miRNA: 3'- aGGuACGAGCgCGUCCGG-------------GUCGCgCG- -5' |
|||||||
26696 | 5' | -61.7 | NC_005808.1 | + | 4663 | 0.68 | 0.243726 |
Target: 5'- -aCA-GgUUGUugGCGGGCaCCAGCGCGCc -3' miRNA: 3'- agGUaCgAGCG--CGUCCG-GGUCGCGCG- -5' |
|||||||
26696 | 5' | -61.7 | NC_005808.1 | + | 8837 | 0.68 | 0.243726 |
Target: 5'- gCCA-GC-CGCaacGCGGG-CCAGCGCGUu -3' miRNA: 3'- aGGUaCGaGCG---CGUCCgGGUCGCGCG- -5' |
|||||||
26696 | 5' | -61.7 | NC_005808.1 | + | 11517 | 0.68 | 0.237575 |
Target: 5'- gCCugcGCUgGCGUgAGGCCCugcgAGCGgGCa -3' miRNA: 3'- aGGua-CGAgCGCG-UCCGGG----UCGCgCG- -5' |
|||||||
26696 | 5' | -61.7 | NC_005808.1 | + | 14625 | 0.68 | 0.237575 |
Target: 5'- uUCCAUGCUU---CcGGCgCCGGUGCGCa -3' miRNA: 3'- -AGGUACGAGcgcGuCCG-GGUCGCGCG- -5' |
|||||||
26696 | 5' | -61.7 | NC_005808.1 | + | 26528 | 0.68 | 0.237575 |
Target: 5'- aUCUAcgGCgccgCGCGCGGcGgCCAcGUGCGCg -3' miRNA: 3'- -AGGUa-CGa---GCGCGUC-CgGGU-CGCGCG- -5' |
|||||||
26696 | 5' | -61.7 | NC_005808.1 | + | 15872 | 0.68 | 0.237575 |
Target: 5'- ----cGCUgGCGguGGCCCGGCuuUGCa -3' miRNA: 3'- agguaCGAgCGCguCCGGGUCGc-GCG- -5' |
|||||||
26696 | 5' | -61.7 | NC_005808.1 | + | 23086 | 0.68 | 0.236967 |
Target: 5'- -aCAUGCUCGCcccgacgccaacgGCGGcGCCCacGGCGacaGCg -3' miRNA: 3'- agGUACGAGCG-------------CGUC-CGGG--UCGCg--CG- -5' |
|||||||
26696 | 5' | -61.7 | NC_005808.1 | + | 24063 | 0.68 | 0.236967 |
Target: 5'- uUCCAUGC-CGCGCAcaguagcGGCgaCC-GCGCGg -3' miRNA: 3'- -AGGUACGaGCGCGU-------CCG--GGuCGCGCg -5' |
|||||||
26696 | 5' | -61.7 | NC_005808.1 | + | 24436 | 0.68 | 0.236967 |
Target: 5'- gUCgGUGC-CGCGCGcGGCCuCGGCGacauugaCGCc -3' miRNA: 3'- -AGgUACGaGCGCGU-CCGG-GUCGC-------GCG- -5' |
|||||||
26696 | 5' | -61.7 | NC_005808.1 | + | 21900 | 0.68 | 0.231553 |
Target: 5'- cCCGUGcCUCGuCGUccaGCCCAuagaguGCGCGCa -3' miRNA: 3'- aGGUAC-GAGC-GCGuc-CGGGU------CGCGCG- -5' |
|||||||
26696 | 5' | -61.7 | NC_005808.1 | + | 9685 | 0.68 | 0.225661 |
Target: 5'- gCCA-GC-CGUGCAGGCCgUGGC-CGCa -3' miRNA: 3'- aGGUaCGaGCGCGUCCGG-GUCGcGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home