miRNA display CGI


Results 21 - 40 of 52 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26698 3' -54.5 NC_005808.1 + 33177 0.67 0.598731
Target:  5'- cGACGcuauucaagaccugcAAGCCCGCgGC-CUGCGCGAc-- -3'
miRNA:   3'- -CUGC---------------UUUGGGCG-UGcGACGCGCUuag -5'
26698 3' -54.5 NC_005808.1 + 42362 0.66 0.684568
Target:  5'- cGGgGAAACCCaGCGCGCcaaugccgaggUGCGCcAGUUc -3'
miRNA:   3'- -CUgCUUUGGG-CGUGCG-----------ACGCGcUUAG- -5'
26698 3' -54.5 NC_005808.1 + 27994 0.7 0.453643
Target:  5'- --gGAAGCCgaCGCACuGCUGaaaaGCGGAUCg -3'
miRNA:   3'- cugCUUUGG--GCGUG-CGACg---CGCUUAG- -5'
26698 3' -54.5 NC_005808.1 + 21595 0.66 0.650772
Target:  5'- --gGAAGCCgGCACGaugcuuUGCuGUGAAUCg -3'
miRNA:   3'- cugCUUUGGgCGUGCg-----ACG-CGCUUAG- -5'
26698 3' -54.5 NC_005808.1 + 27835 0.66 0.67334
Target:  5'- --aGAucGACaCCGaCACGCUGCGCGc--- -3'
miRNA:   3'- cugCU--UUG-GGC-GUGCGACGCGCuuag -5'
26698 3' -54.5 NC_005808.1 + 13920 0.66 0.695743
Target:  5'- cGACGugGCgCGcCGCGCUG-GCGAGg- -3'
miRNA:   3'- -CUGCuuUGgGC-GUGCGACgCGCUUag -5'
26698 3' -54.5 NC_005808.1 + 220 0.67 0.593095
Target:  5'- uGGCGuagguAugCCGCAUGUUGUagggccggcgguaGCGAAUCc -3'
miRNA:   3'- -CUGCu----UugGGCGUGCGACG-------------CGCUUAG- -5'
26698 3' -54.5 NC_005808.1 + 39026 0.66 0.658684
Target:  5'- cGCGGAucgguguacgcccaGCCCGC-UGCUGCGCuguUCg -3'
miRNA:   3'- cUGCUU--------------UGGGCGuGCGACGCGcuuAG- -5'
26698 3' -54.5 NC_005808.1 + 14243 0.66 0.650772
Target:  5'- --gGAAACcauCCGCGCGCUGCcCGAc-- -3'
miRNA:   3'- cugCUUUG---GGCGUGCGACGcGCUuag -5'
26698 3' -54.5 NC_005808.1 + 36121 0.66 0.66207
Target:  5'- uGCG-GGCCUGCGCGgcgugcaguucCUGCGCGAc-- -3'
miRNA:   3'- cUGCuUUGGGCGUGC-----------GACGCGCUuag -5'
26698 3' -54.5 NC_005808.1 + 12193 0.66 0.684568
Target:  5'- aACGAAACCgGCccGCGCUGCcuGCcccuGGUCg -3'
miRNA:   3'- cUGCUUUGGgCG--UGCGACG--CGc---UUAG- -5'
26698 3' -54.5 NC_005808.1 + 14852 0.72 0.333104
Target:  5'- uGGCGGccAGCgCCGCACGCUGgGCGc--- -3'
miRNA:   3'- -CUGCU--UUG-GGCGUGCGACgCGCuuag -5'
26698 3' -54.5 NC_005808.1 + 12132 0.66 0.695743
Target:  5'- uGGCGcGACgCGCcacGCGCUGCGCu---- -3'
miRNA:   3'- -CUGCuUUGgGCG---UGCGACGCGcuuag -5'
26698 3' -54.5 NC_005808.1 + 22479 0.69 0.474217
Target:  5'- aGGCGGAACCagggGCGgGCUGgGCuGGUCa -3'
miRNA:   3'- -CUGCUUUGGg---CGUgCGACgCGcUUAG- -5'
26698 3' -54.5 NC_005808.1 + 32780 0.66 0.695743
Target:  5'- cGGCGAAguccGCCCucgGCACcucgcugguGCUGCGCGucugccGGUCg -3'
miRNA:   3'- -CUGCUU----UGGG---CGUG---------CGACGCGC------UUAG- -5'
26698 3' -54.5 NC_005808.1 + 32288 0.68 0.527557
Target:  5'- --gGAAAacaCCaGCGCGUUGCGCGAccucAUCg -3'
miRNA:   3'- cugCUUUg--GG-CGUGCGACGCGCU----UAG- -5'
26698 3' -54.5 NC_005808.1 + 14053 0.66 0.66207
Target:  5'- cGCGaAAGCCCG-GCGCUGgGCGucGUUg -3'
miRNA:   3'- cUGC-UUUGGGCgUGCGACgCGCu-UAG- -5'
26698 3' -54.5 NC_005808.1 + 30262 0.66 0.695743
Target:  5'- --aGAuAGCUgCGCugGUcGCGCGAGUCg -3'
miRNA:   3'- cugCU-UUGG-GCGugCGaCGCGCUUAG- -5'
26698 3' -54.5 NC_005808.1 + 9195 0.66 0.66207
Target:  5'- cGACGuuGGCCUGCucgGCgGCGCGGcgCa -3'
miRNA:   3'- -CUGCu-UUGGGCGug-CGaCGCGCUuaG- -5'
26698 3' -54.5 NC_005808.1 + 6264 0.66 0.650772
Target:  5'- uGCGGuuGAUCUGCGCGCUGgGCa---- -3'
miRNA:   3'- cUGCU--UUGGGCGUGCGACgCGcuuag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.