Results 1 - 20 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26698 | 3' | -54.5 | NC_005808.1 | + | 21214 | 0.68 | 0.560617 |
Target: 5'- cGCGcAGGCCCaGCGCGCcauUGCGaCGAAcUCg -3' miRNA: 3'- cUGC-UUUGGG-CGUGCG---ACGC-GCUU-AG- -5' |
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26698 | 3' | -54.5 | NC_005808.1 | + | 20609 | 1.09 | 0.000832 |
Target: 5'- cGACGAAACCCGCACGCUGCGCGAAUCc -3' miRNA: 3'- -CUGCUUUGGGCGUGCGACGCGCUUAG- -5' |
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26698 | 3' | -54.5 | NC_005808.1 | + | 29576 | 0.77 | 0.171098 |
Target: 5'- uGACGAGGCCguCGCcacuGCGCUGCGCGGc-- -3' miRNA: 3'- -CUGCUUUGG--GCG----UGCGACGCGCUuag -5' |
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26698 | 3' | -54.5 | NC_005808.1 | + | 28920 | 0.7 | 0.433562 |
Target: 5'- cGACGAcAUCCuCACGgUGCGCGucauAUCa -3' miRNA: 3'- -CUGCUuUGGGcGUGCgACGCGCu---UAG- -5' |
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26698 | 3' | -54.5 | NC_005808.1 | + | 17512 | 0.7 | 0.443538 |
Target: 5'- cACGgcGCCgGgCGCGCUGCGCuGggUg -3' miRNA: 3'- cUGCuuUGGgC-GUGCGACGCG-CuuAg -5' |
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26698 | 3' | -54.5 | NC_005808.1 | + | 20065 | 0.73 | 0.285947 |
Target: 5'- -cCGgcACgCGCGCGCUGCGCGugcUCg -3' miRNA: 3'- cuGCuuUGgGCGUGCGACGCGCuu-AG- -5' |
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26698 | 3' | -54.5 | NC_005808.1 | + | 16804 | 0.72 | 0.341497 |
Target: 5'- aACGAuACCgaGCGCGCcGCGCGcAUCg -3' miRNA: 3'- cUGCUuUGGg-CGUGCGaCGCGCuUAG- -5' |
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26698 | 3' | -54.5 | NC_005808.1 | + | 17929 | 0.71 | 0.395007 |
Target: 5'- gGACGugGCCCGCG-GCggGCGCGAc-- -3' miRNA: 3'- -CUGCuuUGGGCGUgCGa-CGCGCUuag -5' |
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26698 | 3' | -54.5 | NC_005808.1 | + | 4488 | 0.68 | 0.527557 |
Target: 5'- cGACGAAACCgccggaUGCGCGCgGCGCc---- -3' miRNA: 3'- -CUGCUUUGG------GCGUGCGaCGCGcuuag -5' |
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26698 | 3' | -54.5 | NC_005808.1 | + | 220 | 0.67 | 0.593095 |
Target: 5'- uGGCGuagguAugCCGCAUGUUGUagggccggcgguaGCGAAUCc -3' miRNA: 3'- -CUGCu----UugGGCGUGCGACG-------------CGCUUAG- -5' |
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26698 | 3' | -54.5 | NC_005808.1 | + | 13920 | 0.66 | 0.695743 |
Target: 5'- cGACGugGCgCGcCGCGCUG-GCGAGg- -3' miRNA: 3'- -CUGCuuUGgGC-GUGCGACgCGCUUag -5' |
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26698 | 3' | -54.5 | NC_005808.1 | + | 10875 | 0.73 | 0.301057 |
Target: 5'- aGGCGugaaaAAGCCCGCGCGCgGCGgGcuGGUCa -3' miRNA: 3'- -CUGC-----UUUGGGCGUGCGaCGCgC--UUAG- -5' |
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26698 | 3' | -54.5 | NC_005808.1 | + | 32194 | 0.73 | 0.29646 |
Target: 5'- uGGCGAGGCCaucgGCGCGCUGCaucacccggacaucgGCGAcAUCg -3' miRNA: 3'- -CUGCUUUGGg---CGUGCGACG---------------CGCU-UAG- -5' |
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26698 | 3' | -54.5 | NC_005808.1 | + | 27994 | 0.7 | 0.453643 |
Target: 5'- --gGAAGCCgaCGCACuGCUGaaaaGCGGAUCg -3' miRNA: 3'- cugCUUUGG--GCGUG-CGACg---CGCUUAG- -5' |
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26698 | 3' | -54.5 | NC_005808.1 | + | 18024 | 0.69 | 0.502711 |
Target: 5'- gGACGGcccgaccguggccGGCCuCGCcaucgccGCGCUGCGCGAccacgcgGUCa -3' miRNA: 3'- -CUGCU-------------UUGG-GCG-------UGCGACGCGCU-------UAG- -5' |
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26698 | 3' | -54.5 | NC_005808.1 | + | 35785 | 0.72 | 0.324863 |
Target: 5'- cGACGAAACCCGCGCcgugucccugGCUGaccagGCG-GUCa -3' miRNA: 3'- -CUGCUUUGGGCGUG----------CGACg----CGCuUAG- -5' |
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26698 | 3' | -54.5 | NC_005808.1 | + | 5611 | 0.67 | 0.582974 |
Target: 5'- cGGCGggGugcguUUCGCGCGUgGCGCGGcgCa -3' miRNA: 3'- -CUGCuuU-----GGGCGUGCGaCGCGCUuaG- -5' |
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26698 | 3' | -54.5 | NC_005808.1 | + | 26521 | 0.67 | 0.594222 |
Target: 5'- cACGAccaucuacGGCgCCGCGCGCggcggccacgUGCGCGAAc- -3' miRNA: 3'- cUGCU--------UUG-GGCGUGCG----------ACGCGCUUag -5' |
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26698 | 3' | -54.5 | NC_005808.1 | + | 9508 | 0.71 | 0.385719 |
Target: 5'- gGGCGAGGauguaggccgCCGCGuCGCUGCGCGAc-- -3' miRNA: 3'- -CUGCUUUg---------GGCGU-GCGACGCGCUuag -5' |
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26698 | 3' | -54.5 | NC_005808.1 | + | 24801 | 0.7 | 0.452627 |
Target: 5'- aGGCGGAAUacugCGCGCGCUucuauccguucgcGCGCGAcUCg -3' miRNA: 3'- -CUGCUUUGg---GCGUGCGA-------------CGCGCUuAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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