miRNA display CGI


Results 21 - 40 of 52 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26698 3' -54.5 NC_005808.1 + 39026 0.66 0.658684
Target:  5'- cGCGGAucgguguacgcccaGCCCGC-UGCUGCGCuguUCg -3'
miRNA:   3'- cUGCUU--------------UGGGCGuGCGACGCGcuuAG- -5'
26698 3' -54.5 NC_005808.1 + 27835 0.66 0.67334
Target:  5'- --aGAucGACaCCGaCACGCUGCGCGc--- -3'
miRNA:   3'- cugCU--UUG-GGC-GUGCGACGCGCuuag -5'
26698 3' -54.5 NC_005808.1 + 31906 0.66 0.67334
Target:  5'- -cCGAGGCCgUGCGCGCUGC-CG--UCa -3'
miRNA:   3'- cuGCUUUGG-GCGUGCGACGcGCuuAG- -5'
26698 3' -54.5 NC_005808.1 + 26599 0.66 0.684568
Target:  5'- cGGCGAccugucCCUGCGCGCgGCGCa---- -3'
miRNA:   3'- -CUGCUuu----GGGCGUGCGaCGCGcuuag -5'
26698 3' -54.5 NC_005808.1 + 42362 0.66 0.684568
Target:  5'- cGGgGAAACCCaGCGCGCcaaugccgaggUGCGCcAGUUc -3'
miRNA:   3'- -CUgCUUUGGG-CGUGCG-----------ACGCGcUUAG- -5'
26698 3' -54.5 NC_005808.1 + 13920 0.66 0.695743
Target:  5'- cGACGugGCgCGcCGCGCUG-GCGAGg- -3'
miRNA:   3'- -CUGCuuUGgGC-GUGCGACgCGCUUag -5'
26698 3' -54.5 NC_005808.1 + 20065 0.73 0.285947
Target:  5'- -cCGgcACgCGCGCGCUGCGCGugcUCg -3'
miRNA:   3'- cuGCuuUGgGCGUGCGACGCGCuu-AG- -5'
26698 3' -54.5 NC_005808.1 + 29576 0.77 0.171098
Target:  5'- uGACGAGGCCguCGCcacuGCGCUGCGCGGc-- -3'
miRNA:   3'- -CUGCUUUGG--GCG----UGCGACGCGCUuag -5'
26698 3' -54.5 NC_005808.1 + 20609 1.09 0.000832
Target:  5'- cGACGAAACCCGCACGCUGCGCGAAUCc -3'
miRNA:   3'- -CUGCUUUGGGCGUGCGACGCGCUUAG- -5'
26698 3' -54.5 NC_005808.1 + 17287 0.73 0.285947
Target:  5'- cACGAAGCCgGCGcCGCggGCGCGcAUCc -3'
miRNA:   3'- cUGCUUUGGgCGU-GCGa-CGCGCuUAG- -5'
26698 3' -54.5 NC_005808.1 + 30364 0.74 0.264414
Target:  5'- cGCGAGaACCCGC-CGCUGCuguaggGUGggUCg -3'
miRNA:   3'- cUGCUU-UGGGCGuGCGACG------CGCuuAG- -5'
26698 3' -54.5 NC_005808.1 + 14852 0.72 0.333104
Target:  5'- uGGCGGccAGCgCCGCACGCUGgGCGc--- -3'
miRNA:   3'- -CUGCU--UUG-GGCGUGCGACgCGCuuag -5'
26698 3' -54.5 NC_005808.1 + 36856 0.7 0.423718
Target:  5'- -uCGcuGCCCgGCGCGCUGgGCG-AUCu -3'
miRNA:   3'- cuGCuuUGGG-CGUGCGACgCGCuUAG- -5'
26698 3' -54.5 NC_005808.1 + 3483 0.7 0.452627
Target:  5'- gGGCGAGuucgacgGCCCGCuguaccaguACGCaGCGCGAGa- -3'
miRNA:   3'- -CUGCUU-------UGGGCG---------UGCGaCGCGCUUag -5'
26698 3' -54.5 NC_005808.1 + 22479 0.69 0.474217
Target:  5'- aGGCGGAACCagggGCGgGCUGgGCuGGUCa -3'
miRNA:   3'- -CUGCUUUGGg---CGUgCGACgCGcUUAG- -5'
26698 3' -54.5 NC_005808.1 + 32288 0.68 0.527557
Target:  5'- --gGAAAacaCCaGCGCGUUGCGCGAccucAUCg -3'
miRNA:   3'- cugCUUUg--GG-CGUGCGACGCGCU----UAG- -5'
26698 3' -54.5 NC_005808.1 + 33638 0.68 0.537405
Target:  5'- uGGCGAAuCCgGCAcggccacCGCUG-GCGAAUCc -3'
miRNA:   3'- -CUGCUUuGGgCGU-------GCGACgCGCUUAG- -5'
26698 3' -54.5 NC_005808.1 + 26031 0.68 0.538503
Target:  5'- cGGCGAuggcaucaaAGCCCGCGCGgCggGCGCGc--- -3'
miRNA:   3'- -CUGCU---------UUGGGCGUGC-Ga-CGCGCuuag -5'
26698 3' -54.5 NC_005808.1 + 35600 0.67 0.61681
Target:  5'- cGCGAgccGACCCGCucGCGC-GUGUGAAa- -3'
miRNA:   3'- cUGCU---UUGGGCG--UGCGaCGCGCUUag -5'
26698 3' -54.5 NC_005808.1 + 8174 0.66 0.639454
Target:  5'- cGCGugcGCCCGgAUGCUGCcgGCGAuuucAUCg -3'
miRNA:   3'- cUGCuu-UGGGCgUGCGACG--CGCU----UAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.