Results 21 - 40 of 52 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26698 | 3' | -54.5 | NC_005808.1 | + | 39026 | 0.66 | 0.658684 |
Target: 5'- cGCGGAucgguguacgcccaGCCCGC-UGCUGCGCuguUCg -3' miRNA: 3'- cUGCUU--------------UGGGCGuGCGACGCGcuuAG- -5' |
|||||||
26698 | 3' | -54.5 | NC_005808.1 | + | 27835 | 0.66 | 0.67334 |
Target: 5'- --aGAucGACaCCGaCACGCUGCGCGc--- -3' miRNA: 3'- cugCU--UUG-GGC-GUGCGACGCGCuuag -5' |
|||||||
26698 | 3' | -54.5 | NC_005808.1 | + | 31906 | 0.66 | 0.67334 |
Target: 5'- -cCGAGGCCgUGCGCGCUGC-CG--UCa -3' miRNA: 3'- cuGCUUUGG-GCGUGCGACGcGCuuAG- -5' |
|||||||
26698 | 3' | -54.5 | NC_005808.1 | + | 26599 | 0.66 | 0.684568 |
Target: 5'- cGGCGAccugucCCUGCGCGCgGCGCa---- -3' miRNA: 3'- -CUGCUuu----GGGCGUGCGaCGCGcuuag -5' |
|||||||
26698 | 3' | -54.5 | NC_005808.1 | + | 42362 | 0.66 | 0.684568 |
Target: 5'- cGGgGAAACCCaGCGCGCcaaugccgaggUGCGCcAGUUc -3' miRNA: 3'- -CUgCUUUGGG-CGUGCG-----------ACGCGcUUAG- -5' |
|||||||
26698 | 3' | -54.5 | NC_005808.1 | + | 13920 | 0.66 | 0.695743 |
Target: 5'- cGACGugGCgCGcCGCGCUG-GCGAGg- -3' miRNA: 3'- -CUGCuuUGgGC-GUGCGACgCGCUUag -5' |
|||||||
26698 | 3' | -54.5 | NC_005808.1 | + | 20065 | 0.73 | 0.285947 |
Target: 5'- -cCGgcACgCGCGCGCUGCGCGugcUCg -3' miRNA: 3'- cuGCuuUGgGCGUGCGACGCGCuu-AG- -5' |
|||||||
26698 | 3' | -54.5 | NC_005808.1 | + | 29576 | 0.77 | 0.171098 |
Target: 5'- uGACGAGGCCguCGCcacuGCGCUGCGCGGc-- -3' miRNA: 3'- -CUGCUUUGG--GCG----UGCGACGCGCUuag -5' |
|||||||
26698 | 3' | -54.5 | NC_005808.1 | + | 20609 | 1.09 | 0.000832 |
Target: 5'- cGACGAAACCCGCACGCUGCGCGAAUCc -3' miRNA: 3'- -CUGCUUUGGGCGUGCGACGCGCUUAG- -5' |
|||||||
26698 | 3' | -54.5 | NC_005808.1 | + | 17287 | 0.73 | 0.285947 |
Target: 5'- cACGAAGCCgGCGcCGCggGCGCGcAUCc -3' miRNA: 3'- cUGCUUUGGgCGU-GCGa-CGCGCuUAG- -5' |
|||||||
26698 | 3' | -54.5 | NC_005808.1 | + | 30364 | 0.74 | 0.264414 |
Target: 5'- cGCGAGaACCCGC-CGCUGCuguaggGUGggUCg -3' miRNA: 3'- cUGCUU-UGGGCGuGCGACG------CGCuuAG- -5' |
|||||||
26698 | 3' | -54.5 | NC_005808.1 | + | 14852 | 0.72 | 0.333104 |
Target: 5'- uGGCGGccAGCgCCGCACGCUGgGCGc--- -3' miRNA: 3'- -CUGCU--UUG-GGCGUGCGACgCGCuuag -5' |
|||||||
26698 | 3' | -54.5 | NC_005808.1 | + | 36856 | 0.7 | 0.423718 |
Target: 5'- -uCGcuGCCCgGCGCGCUGgGCG-AUCu -3' miRNA: 3'- cuGCuuUGGG-CGUGCGACgCGCuUAG- -5' |
|||||||
26698 | 3' | -54.5 | NC_005808.1 | + | 3483 | 0.7 | 0.452627 |
Target: 5'- gGGCGAGuucgacgGCCCGCuguaccaguACGCaGCGCGAGa- -3' miRNA: 3'- -CUGCUU-------UGGGCG---------UGCGaCGCGCUUag -5' |
|||||||
26698 | 3' | -54.5 | NC_005808.1 | + | 22479 | 0.69 | 0.474217 |
Target: 5'- aGGCGGAACCagggGCGgGCUGgGCuGGUCa -3' miRNA: 3'- -CUGCUUUGGg---CGUgCGACgCGcUUAG- -5' |
|||||||
26698 | 3' | -54.5 | NC_005808.1 | + | 32288 | 0.68 | 0.527557 |
Target: 5'- --gGAAAacaCCaGCGCGUUGCGCGAccucAUCg -3' miRNA: 3'- cugCUUUg--GG-CGUGCGACGCGCU----UAG- -5' |
|||||||
26698 | 3' | -54.5 | NC_005808.1 | + | 33638 | 0.68 | 0.537405 |
Target: 5'- uGGCGAAuCCgGCAcggccacCGCUG-GCGAAUCc -3' miRNA: 3'- -CUGCUUuGGgCGU-------GCGACgCGCUUAG- -5' |
|||||||
26698 | 3' | -54.5 | NC_005808.1 | + | 26031 | 0.68 | 0.538503 |
Target: 5'- cGGCGAuggcaucaaAGCCCGCGCGgCggGCGCGc--- -3' miRNA: 3'- -CUGCU---------UUGGGCGUGC-Ga-CGCGCuuag -5' |
|||||||
26698 | 3' | -54.5 | NC_005808.1 | + | 35600 | 0.67 | 0.61681 |
Target: 5'- cGCGAgccGACCCGCucGCGC-GUGUGAAa- -3' miRNA: 3'- cUGCU---UUGGGCG--UGCGaCGCGCUUag -5' |
|||||||
26698 | 3' | -54.5 | NC_005808.1 | + | 8174 | 0.66 | 0.639454 |
Target: 5'- cGCGugcGCCCGgAUGCUGCcgGCGAuuucAUCg -3' miRNA: 3'- cUGCuu-UGGGCgUGCGACG--CGCU----UAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home