miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
267 5' -52.4 AC_000008.1 + 13761 0.66 0.748195
Target:  5'- gCGAGGAGGAguaccuaaacaacucGCUGCuGCaGCCGCa- -3'
miRNA:   3'- gGUUUUUCUU---------------CGACGuCGaCGGCGgc -5'
267 5' -52.4 AC_000008.1 + 30395 0.66 0.743773
Target:  5'- uCCAAGGGcAAGCUGCGcGCcaaggGCCacGCCGc -3'
miRNA:   3'- -GGUUUUUcUUCGACGU-CGa----CGG--CGGC- -5'
267 5' -52.4 AC_000008.1 + 25994 0.66 0.743773
Target:  5'- gUCAAAAcGAAGcCUGgGGCaugGCCGaCCGc -3'
miRNA:   3'- -GGUUUUuCUUC-GACgUCGa--CGGC-GGC- -5'
267 5' -52.4 AC_000008.1 + 13658 0.66 0.743773
Target:  5'- uCCGAucuAGgcGCUGCGGCc-CCGCgGu -3'
miRNA:   3'- -GGUUuu-UCuuCGACGUCGacGGCGgC- -5'
267 5' -52.4 AC_000008.1 + 10774 0.66 0.743773
Target:  5'- uCCuuccAGgcGCgGCGGCUGCUGCg- -3'
miRNA:   3'- -GGuuuuUCuuCGaCGUCGACGGCGgc -5'
267 5' -52.4 AC_000008.1 + 33188 0.66 0.737102
Target:  5'- aUCAGGAuaGGGcggugguGCUGCAGCagcgcgcgaauaaacUGCUGCCGc -3'
miRNA:   3'- -GGUUUU--UCUu------CGACGUCG---------------ACGGCGGC- -5'
267 5' -52.4 AC_000008.1 + 5529 0.66 0.721374
Target:  5'- gUggGgcGAGGCUGauuGGCUgggacaaaGCCGCCGg -3'
miRNA:   3'- gGuuUuuCUUCGACg--UCGA--------CGGCGGC- -5'
267 5' -52.4 AC_000008.1 + 33694 0.66 0.721374
Target:  5'- uCCAu--GGGcuCUGCucCUGCCGCCGc -3'
miRNA:   3'- -GGUuuuUCUucGACGucGACGGCGGC- -5'
267 5' -52.4 AC_000008.1 + 23177 0.66 0.721374
Target:  5'- aCCAugGAGcccAGGUUGCccuGCUGCUGCgCGc -3'
miRNA:   3'- -GGUuuUUC---UUCGACGu--CGACGGCG-GC- -5'
267 5' -52.4 AC_000008.1 + 12523 0.66 0.710018
Target:  5'- aCCAAGuGGAAGCUcUGGCgGCCGUa- -3'
miRNA:   3'- -GGUUUuUCUUCGAcGUCGaCGGCGgc -5'
267 5' -52.4 AC_000008.1 + 24830 0.67 0.675485
Target:  5'- -aGGAGGGggGC-GCAuCUGCCGCa- -3'
miRNA:   3'- ggUUUUUCuuCGaCGUcGACGGCGgc -5'
267 5' -52.4 AC_000008.1 + 26803 0.67 0.652211
Target:  5'- gCAGGAGGAGgagcGCUGCGuCUGgCGCCc -3'
miRNA:   3'- gGUUUUUCUU----CGACGUcGACgGCGGc -5'
267 5' -52.4 AC_000008.1 + 24771 0.67 0.652211
Target:  5'- gUAGGAGGAGGggagggugccCUGCAuGuCUGCCGCUGc -3'
miRNA:   3'- gGUUUUUCUUC----------GACGU-C-GACGGCGGC- -5'
267 5' -52.4 AC_000008.1 + 23255 0.67 0.652211
Target:  5'- uCCAGGuu--GGuCUGCAcGUUGCCGCUGu -3'
miRNA:   3'- -GGUUUuucuUC-GACGU-CGACGGCGGC- -5'
267 5' -52.4 AC_000008.1 + 20822 0.67 0.640536
Target:  5'- gCCAcu-----GCUGUuGCUGCCGCCu -3'
miRNA:   3'- -GGUuuuucuuCGACGuCGACGGCGGc -5'
267 5' -52.4 AC_000008.1 + 23539 0.68 0.605506
Target:  5'- gCCGGAcGGcuGGCucUGCAGC-GCCGCCc -3'
miRNA:   3'- -GGUUUuUCu-UCG--ACGUCGaCGGCGGc -5'
267 5' -52.4 AC_000008.1 + 19549 0.68 0.593867
Target:  5'- gCCGc--GGcuGCUGCGGCgGCCGCuCGu -3'
miRNA:   3'- -GGUuuuUCuuCGACGUCGaCGGCG-GC- -5'
267 5' -52.4 AC_000008.1 + 9076 0.68 0.582263
Target:  5'- gCCAGAcgc-AGCgcuccuccuccUGCuGCUGCCGCCGc -3'
miRNA:   3'- -GGUUUuucuUCG-----------ACGuCGACGGCGGC- -5'
267 5' -52.4 AC_000008.1 + 22258 0.69 0.570707
Target:  5'- gCCugc-GGAAGCUuuccuuucGCAGC-GCCGCCu -3'
miRNA:   3'- -GGuuuuUCUUCGA--------CGUCGaCGGCGGc -5'
267 5' -52.4 AC_000008.1 + 10335 0.69 0.525136
Target:  5'- aCCAAAAAGu-GCgGCGGCgGCUGgCGg -3'
miRNA:   3'- -GGUUUUUCuuCGaCGUCGaCGGCgGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.