Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
267 | 5' | -52.4 | AC_000008.1 | + | 5529 | 0.66 | 0.721374 |
Target: 5'- gUggGgcGAGGCUGauuGGCUgggacaaaGCCGCCGg -3' miRNA: 3'- gGuuUuuCUUCGACg--UCGA--------CGGCGGC- -5' |
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267 | 5' | -52.4 | AC_000008.1 | + | 33694 | 0.66 | 0.721374 |
Target: 5'- uCCAu--GGGcuCUGCucCUGCCGCCGc -3' miRNA: 3'- -GGUuuuUCUucGACGucGACGGCGGC- -5' |
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267 | 5' | -52.4 | AC_000008.1 | + | 30395 | 0.66 | 0.743773 |
Target: 5'- uCCAAGGGcAAGCUGCGcGCcaaggGCCacGCCGc -3' miRNA: 3'- -GGUUUUUcUUCGACGU-CGa----CGG--CGGC- -5' |
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267 | 5' | -52.4 | AC_000008.1 | + | 25994 | 0.66 | 0.743773 |
Target: 5'- gUCAAAAcGAAGcCUGgGGCaugGCCGaCCGc -3' miRNA: 3'- -GGUUUUuCUUC-GACgUCGa--CGGC-GGC- -5' |
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267 | 5' | -52.4 | AC_000008.1 | + | 20822 | 0.67 | 0.640536 |
Target: 5'- gCCAcu-----GCUGUuGCUGCCGCCu -3' miRNA: 3'- -GGUuuuucuuCGACGuCGACGGCGGc -5' |
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267 | 5' | -52.4 | AC_000008.1 | + | 24771 | 0.67 | 0.652211 |
Target: 5'- gUAGGAGGAGGggagggugccCUGCAuGuCUGCCGCUGc -3' miRNA: 3'- gGUUUUUCUUC----------GACGU-C-GACGGCGGC- -5' |
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267 | 5' | -52.4 | AC_000008.1 | + | 25091 | 0.76 | 0.223482 |
Target: 5'- gCCAAAA--AAGCUagcGCAGCaGCCGCCGc -3' miRNA: 3'- -GGUUUUucUUCGA---CGUCGaCGGCGGC- -5' |
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267 | 5' | -52.4 | AC_000008.1 | + | 9731 | 0.75 | 0.270876 |
Target: 5'- gCCAuccuGGGAAGCaagggcccGCGGCUGCUGCUGa -3' miRNA: 3'- -GGUuu--UUCUUCGa-------CGUCGACGGCGGC- -5' |
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267 | 5' | -52.4 | AC_000008.1 | + | 22258 | 0.69 | 0.570707 |
Target: 5'- gCCugc-GGAAGCUuuccuuucGCAGC-GCCGCCu -3' miRNA: 3'- -GGuuuuUCUUCGA--------CGUCGaCGGCGGc -5' |
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267 | 5' | -52.4 | AC_000008.1 | + | 9076 | 0.68 | 0.582263 |
Target: 5'- gCCAGAcgc-AGCgcuccuccuccUGCuGCUGCCGCCGc -3' miRNA: 3'- -GGUUUuucuUCG-----------ACGuCGACGGCGGC- -5' |
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267 | 5' | -52.4 | AC_000008.1 | + | 23539 | 0.68 | 0.605506 |
Target: 5'- gCCGGAcGGcuGGCucUGCAGC-GCCGCCc -3' miRNA: 3'- -GGUUUuUCu-UCG--ACGUCGaCGGCGGc -5' |
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267 | 5' | -52.4 | AC_000008.1 | + | 12523 | 0.66 | 0.710018 |
Target: 5'- aCCAAGuGGAAGCUcUGGCgGCCGUa- -3' miRNA: 3'- -GGUUUuUCUUCGAcGUCGaCGGCGgc -5' |
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267 | 5' | -52.4 | AC_000008.1 | + | 20667 | 0.7 | 0.491883 |
Target: 5'- gCAGc-GGggGCgGCAGCUucgGCCGCUGc -3' miRNA: 3'- gGUUuuUCuuCGaCGUCGA---CGGCGGC- -5' |
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267 | 5' | -52.4 | AC_000008.1 | + | 24830 | 0.67 | 0.675485 |
Target: 5'- -aGGAGGGggGC-GCAuCUGCCGCa- -3' miRNA: 3'- ggUUUUUCuuCGaCGUcGACGGCGgc -5' |
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267 | 5' | -52.4 | AC_000008.1 | + | 19549 | 0.68 | 0.593867 |
Target: 5'- gCCGc--GGcuGCUGCGGCgGCCGCuCGu -3' miRNA: 3'- -GGUuuuUCuuCGACGUCGaCGGCG-GC- -5' |
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267 | 5' | -52.4 | AC_000008.1 | + | 9189 | 0.74 | 0.285827 |
Target: 5'- ---------cGCUGCcGCUGCCGCCGg -3' miRNA: 3'- gguuuuucuuCGACGuCGACGGCGGC- -5' |
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267 | 5' | -52.4 | AC_000008.1 | + | 23432 | 0.81 | 0.101739 |
Target: 5'- gCGGAGAGccgguuGGcCUGCGGCUGCUGCCGg -3' miRNA: 3'- gGUUUUUCu-----UC-GACGUCGACGGCGGC- -5' |
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267 | 5' | -52.4 | AC_000008.1 | + | 23255 | 0.67 | 0.652211 |
Target: 5'- uCCAGGuu--GGuCUGCAcGUUGCCGCUGu -3' miRNA: 3'- -GGUUUuucuUC-GACGU-CGACGGCGGC- -5' |
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267 | 5' | -52.4 | AC_000008.1 | + | 23177 | 0.66 | 0.721374 |
Target: 5'- aCCAugGAGcccAGGUUGCccuGCUGCUGCgCGc -3' miRNA: 3'- -GGUuuUUC---UUCGACGu--CGACGGCG-GC- -5' |
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267 | 5' | -52.4 | AC_000008.1 | + | 10774 | 0.66 | 0.743773 |
Target: 5'- uCCuuccAGgcGCgGCGGCUGCUGCg- -3' miRNA: 3'- -GGuuuuUCuuCGaCGUCGACGGCGgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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