Results 1 - 20 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26702 | 5' | -57.1 | NC_005808.1 | + | 19156 | 0.66 | 0.515597 |
Target: 5'- -aCGCGCGAACCAuccGCAuCCCGGc -3' miRNA: 3'- ugGCGCGCUUGGUcuuCGUcGGGUUa -5' |
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26702 | 5' | -57.1 | NC_005808.1 | + | 24647 | 0.66 | 0.515597 |
Target: 5'- uGCCG-GCGGGCCAGGAugguguugucGC-GCCCGc- -3' miRNA: 3'- -UGGCgCGCUUGGUCUU----------CGuCGGGUua -5' |
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26702 | 5' | -57.1 | NC_005808.1 | + | 31524 | 0.66 | 0.515597 |
Target: 5'- -gCGCGCGAcCCGGAcacguucgAGCAGUUCGu- -3' miRNA: 3'- ugGCGCGCUuGGUCU--------UCGUCGGGUua -5' |
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26702 | 5' | -57.1 | NC_005808.1 | + | 6400 | 0.66 | 0.504873 |
Target: 5'- gGCCgGCcCGGugUAGucGCGGCCCAu- -3' miRNA: 3'- -UGG-CGcGCUugGUCuuCGUCGGGUua -5' |
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26702 | 5' | -57.1 | NC_005808.1 | + | 32716 | 0.66 | 0.494247 |
Target: 5'- cGCCaCGCGccuGGCCgAGAAGCAGCgcgCCGGUg -3' miRNA: 3'- -UGGcGCGC---UUGG-UCUUCGUCG---GGUUA- -5' |
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26702 | 5' | -57.1 | NC_005808.1 | + | 42148 | 0.66 | 0.494247 |
Target: 5'- cCCGCaaGCuGGCCGcGcAGCAGCCCAAc -3' miRNA: 3'- uGGCG--CGcUUGGU-CuUCGUCGGGUUa -5' |
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26702 | 5' | -57.1 | NC_005808.1 | + | 24549 | 0.66 | 0.483724 |
Target: 5'- cCCGCGcCGGuaagGCCcccAAGCAGCCCGc- -3' miRNA: 3'- uGGCGC-GCU----UGGuc-UUCGUCGGGUua -5' |
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26702 | 5' | -57.1 | NC_005808.1 | + | 9085 | 0.66 | 0.47331 |
Target: 5'- uGCCGCGauAGCCAGcGGUGGCCg--- -3' miRNA: 3'- -UGGCGCgcUUGGUCuUCGUCGGguua -5' |
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26702 | 5' | -57.1 | NC_005808.1 | + | 9157 | 0.66 | 0.47331 |
Target: 5'- uGCCGCGauAGCCAGcGGUGGCCg--- -3' miRNA: 3'- -UGGCGCgcUUGGUCuUCGUCGGguua -5' |
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26702 | 5' | -57.1 | NC_005808.1 | + | 9037 | 0.66 | 0.47331 |
Target: 5'- uGCCGCGauAGCCAGcGGUGGCCg--- -3' miRNA: 3'- -UGGCGCgcUUGGUCuUCGUCGGguua -5' |
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26702 | 5' | -57.1 | NC_005808.1 | + | 679 | 0.66 | 0.47331 |
Target: 5'- gGCCGCcuacgGCGGcGCCGGccGGGCcGCCCAAg -3' miRNA: 3'- -UGGCG-----CGCU-UGGUC--UUCGuCGGGUUa -5' |
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26702 | 5' | -57.1 | NC_005808.1 | + | 9301 | 0.66 | 0.47331 |
Target: 5'- uGCCGCGauAGCCAGcGGUGGCCg--- -3' miRNA: 3'- -UGGCGCgcUUGGUCuUCGUCGGguua -5' |
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26702 | 5' | -57.1 | NC_005808.1 | + | 9205 | 0.66 | 0.47331 |
Target: 5'- uGCCGCGauAGCCAGcGGUGGCCg--- -3' miRNA: 3'- -UGGCGCgcUUGGUCuUCGUCGGguua -5' |
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26702 | 5' | -57.1 | NC_005808.1 | + | 9181 | 0.66 | 0.47331 |
Target: 5'- uGCCGCGauAGCCAGcGGUGGCCg--- -3' miRNA: 3'- -UGGCGCgcUUGGUCuUCGUCGGguua -5' |
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26702 | 5' | -57.1 | NC_005808.1 | + | 9109 | 0.66 | 0.47331 |
Target: 5'- uGCCGCGauAGCCAGcGGUGGCCg--- -3' miRNA: 3'- -UGGCGCgcUUGGUCuUCGUCGGguua -5' |
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26702 | 5' | -57.1 | NC_005808.1 | + | 9397 | 0.66 | 0.47331 |
Target: 5'- uGCCGCGauAGCCAGcGGUGGCCg--- -3' miRNA: 3'- -UGGCGCgcUUGGUCuUCGUCGGguua -5' |
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26702 | 5' | -57.1 | NC_005808.1 | + | 12647 | 0.66 | 0.47331 |
Target: 5'- cGCCGCGaCGAcaagcaccACCuGAcuGGCaAGCCCAc- -3' miRNA: 3'- -UGGCGC-GCU--------UGGuCU--UCG-UCGGGUua -5' |
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26702 | 5' | -57.1 | NC_005808.1 | + | 9373 | 0.66 | 0.47331 |
Target: 5'- uGCCGCGauAGCCAGcGGUGGCCg--- -3' miRNA: 3'- -UGGCGCgcUUGGUCuUCGUCGGguua -5' |
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26702 | 5' | -57.1 | NC_005808.1 | + | 9349 | 0.66 | 0.47331 |
Target: 5'- uGCCGCGauAGCCAGcGGUGGCCg--- -3' miRNA: 3'- -UGGCGCgcUUGGUCuUCGUCGGguua -5' |
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26702 | 5' | -57.1 | NC_005808.1 | + | 9253 | 0.66 | 0.47331 |
Target: 5'- uGCCGCGauAGCCAGcGGUGGCCg--- -3' miRNA: 3'- -UGGCGCgcUUGGUCuUCGUCGGguua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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