miRNA display CGI


Results 1 - 20 of 62 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26702 5' -57.1 NC_005808.1 + 42148 0.66 0.494247
Target:  5'- cCCGCaaGCuGGCCGcGcAGCAGCCCAAc -3'
miRNA:   3'- uGGCG--CGcUUGGU-CuUCGUCGGGUUa -5'
26702 5' -57.1 NC_005808.1 + 40650 0.68 0.367157
Target:  5'- gGCCGCGCGcucGACCAGAAcccGCAGa-CGAUc -3'
miRNA:   3'- -UGGCGCGC---UUGGUCUU---CGUCggGUUA- -5'
26702 5' -57.1 NC_005808.1 + 40578 0.67 0.452829
Target:  5'- cGCCuGCGCGAcuucGCCAGcGAGC-GCCUGGg -3'
miRNA:   3'- -UGG-CGCGCU----UGGUC-UUCGuCGGGUUa -5'
26702 5' -57.1 NC_005808.1 + 39773 0.7 0.271408
Target:  5'- cGCUGCGCGuGGCCGcGAGCaccuGGCCCGAc -3'
miRNA:   3'- -UGGCGCGC-UUGGUcUUCG----UCGGGUUa -5'
26702 5' -57.1 NC_005808.1 + 37372 0.68 0.358349
Target:  5'- aACUGCGCGAAcugcuggguauCCGGuuGCAGgCCAGc -3'
miRNA:   3'- -UGGCGCGCUU-----------GGUCuuCGUCgGGUUa -5'
26702 5' -57.1 NC_005808.1 + 37058 0.7 0.300909
Target:  5'- -gCGCGUGAuugACCAGAAGCuGCCg--- -3'
miRNA:   3'- ugGCGCGCU---UGGUCUUCGuCGGguua -5'
26702 5' -57.1 NC_005808.1 + 34491 0.66 0.470208
Target:  5'- gGCCGCGCGGugCAG-GGCcucaaacgcuuuugGGCCUc-- -3'
miRNA:   3'- -UGGCGCGCUugGUCuUCG--------------UCGGGuua -5'
26702 5' -57.1 NC_005808.1 + 33951 0.68 0.359223
Target:  5'- gACCGCGCGAugaagGCCGGcgaccucgccaccgcAGCGGCCgAGa -3'
miRNA:   3'- -UGGCGCGCU-----UGGUCu--------------UCGUCGGgUUa -5'
26702 5' -57.1 NC_005808.1 + 33832 0.67 0.43284
Target:  5'- cGCCGCGUGcuGCCcGAAGCGGCaCGu- -3'
miRNA:   3'- -UGGCGCGCu-UGGuCUUCGUCGgGUua -5'
26702 5' -57.1 NC_005808.1 + 32716 0.66 0.494247
Target:  5'- cGCCaCGCGccuGGCCgAGAAGCAGCgcgCCGGUg -3'
miRNA:   3'- -UGGcGCGC---UUGG-UCUUCGUCG---GGUUA- -5'
26702 5' -57.1 NC_005808.1 + 31524 0.66 0.515597
Target:  5'- -gCGCGCGAcCCGGAcacguucgAGCAGUUCGu- -3'
miRNA:   3'- ugGCGCGCUuGGUCU--------UCGUCGGGUua -5'
26702 5' -57.1 NC_005808.1 + 31041 0.69 0.308661
Target:  5'- aAUCGCGCGGGCCAacguGCgcgaaGGCCCGAa -3'
miRNA:   3'- -UGGCGCGCUUGGUcuu-CG-----UCGGGUUa -5'
26702 5' -57.1 NC_005808.1 + 30637 0.68 0.385213
Target:  5'- aGCCgGCGCGAAUgAGGGcGCAGaCCAAUu -3'
miRNA:   3'- -UGG-CGCGCUUGgUCUU-CGUCgGGUUA- -5'
26702 5' -57.1 NC_005808.1 + 29027 0.69 0.316564
Target:  5'- cGCCGCGCuucGGCCAGGucgauacccaccGGCGGCUCGu- -3'
miRNA:   3'- -UGGCGCGc--UUGGUCU------------UCGUCGGGUua -5'
26702 5' -57.1 NC_005808.1 + 28647 0.71 0.225438
Target:  5'- uCCGCGCGcaguGCCAGAucggugccGGCGGCCUc-- -3'
miRNA:   3'- uGGCGCGCu---UGGUCU--------UCGUCGGGuua -5'
26702 5' -57.1 NC_005808.1 + 27701 0.72 0.213574
Target:  5'- gGCCGCGC--GCCGGcAGCGGCUCGc- -3'
miRNA:   3'- -UGGCGCGcuUGGUCuUCGUCGGGUua -5'
26702 5' -57.1 NC_005808.1 + 25621 0.68 0.376112
Target:  5'- gGCgGCGCGGucGCCAGcAGCGcGUCCAc- -3'
miRNA:   3'- -UGgCGCGCU--UGGUCuUCGU-CGGGUua -5'
26702 5' -57.1 NC_005808.1 + 24647 0.66 0.515597
Target:  5'- uGCCG-GCGGGCCAGGAugguguugucGC-GCCCGc- -3'
miRNA:   3'- -UGGCgCGCUUGGUCUU----------CGuCGGGUua -5'
26702 5' -57.1 NC_005808.1 + 24549 0.66 0.483724
Target:  5'- cCCGCGcCGGuaagGCCcccAAGCAGCCCGc- -3'
miRNA:   3'- uGGCGC-GCU----UGGuc-UUCGUCGGGUua -5'
26702 5' -57.1 NC_005808.1 + 24462 0.71 0.231577
Target:  5'- aGCUGCGCGAGCCGGgcGacaAGUUCGAc -3'
miRNA:   3'- -UGGCGCGCUUGGUCuuCg--UCGGGUUa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.