Results 21 - 28 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 26706 | 3' | -53.1 | NC_005808.1 | + | 16789 | 1.1 | 0.00112 |
|
Target: 5'- gGCCCGGUGCAGAUCAACGAUACCGAGc -3' miRNA: 3'- -CGGGCCACGUCUAGUUGCUAUGGCUC- -5' |
|||||||
| 26706 | 3' | -53.1 | NC_005808.1 | + | 15387 | 0.72 | 0.408005 |
|
Target: 5'- cGUCCGcGUGCGGGcCGGCGAagaUGCCGGa -3' miRNA: 3'- -CGGGC-CACGUCUaGUUGCU---AUGGCUc -5' |
|||||||
| 26706 | 3' | -53.1 | NC_005808.1 | + | 13467 | 0.68 | 0.664781 |
|
Target: 5'- gGCgCGGUGuCGGGcaugaccUgGGCGAUGCCGAc -3' miRNA: 3'- -CGgGCCAC-GUCU-------AgUUGCUAUGGCUc -5' |
|||||||
| 26706 | 3' | -53.1 | NC_005808.1 | + | 11702 | 0.71 | 0.478017 |
|
Target: 5'- aUCCGGUGCAGuGUCGGCugggauAUGCCGAc -3' miRNA: 3'- cGGGCCACGUC-UAGUUGc-----UAUGGCUc -5' |
|||||||
| 26706 | 3' | -53.1 | NC_005808.1 | + | 11428 | 0.7 | 0.542417 |
|
Target: 5'- aGCCgGcGUGCAGGUCGccgauaaggcGCGAcACCGGc -3' miRNA: 3'- -CGGgC-CACGUCUAGU----------UGCUaUGGCUc -5' |
|||||||
| 26706 | 3' | -53.1 | NC_005808.1 | + | 10941 | 0.68 | 0.665906 |
|
Target: 5'- gGCCuCGG-GCAGuugcgCGGCGAcaGCCGGGg -3' miRNA: 3'- -CGG-GCCaCGUCua---GUUGCUa-UGGCUC- -5' |
|||||||
| 26706 | 3' | -53.1 | NC_005808.1 | + | 3741 | 0.66 | 0.774825 |
|
Target: 5'- -gCCGGUGguGggCAcguCGGUGCCGc- -3' miRNA: 3'- cgGGCCACguCuaGUu--GCUAUGGCuc -5' |
|||||||
| 26706 | 3' | -53.1 | NC_005808.1 | + | 632 | 0.67 | 0.743222 |
|
Target: 5'- aGCCuCGGcGCGGGUgAACGGgucagGCgGGGg -3' miRNA: 3'- -CGG-GCCaCGUCUAgUUGCUa----UGgCUC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home