miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26714 3' -59.8 NC_005808.1 + 11933 1.05 0.000481
Target:  5'- cCGCCUACACCCAGCGGCCCGACGAAUu -3'
miRNA:   3'- -GCGGAUGUGGGUCGCCGGGCUGCUUA- -5'
26714 3' -59.8 NC_005808.1 + 24927 0.73 0.127786
Target:  5'- uCGCCUACGCCCAGCccgCCGACGc-- -3'
miRNA:   3'- -GCGGAUGUGGGUCGccgGGCUGCuua -5'
26714 3' -59.8 NC_005808.1 + 30998 0.73 0.131378
Target:  5'- gGCaCUGCuGCCCGGCGGCcagCCGGCGGc- -3'
miRNA:   3'- gCG-GAUG-UGGGUCGCCG---GGCUGCUua -5'
26714 3' -59.8 NC_005808.1 + 29416 0.72 0.168119
Target:  5'- aCGCCggccaaggGCGCCCAGCGcGgCCGACa--- -3'
miRNA:   3'- -GCGGa-------UGUGGGUCGC-CgGGCUGcuua -5'
26714 3' -59.8 NC_005808.1 + 24150 0.71 0.177449
Target:  5'- gCGCCUG-GCCCAGCGcCUCGACGGc- -3'
miRNA:   3'- -GCGGAUgUGGGUCGCcGGGCUGCUua -5'
26714 3' -59.8 NC_005808.1 + 27422 0.71 0.177449
Target:  5'- gCGCCUggcgcaccGCGCCCGGCGGCCgcaGGCc--- -3'
miRNA:   3'- -GCGGA--------UGUGGGUCGCCGGg--CUGcuua -5'
26714 3' -59.8 NC_005808.1 + 38508 0.71 0.187237
Target:  5'- gCGCCgccCACCUGGcCGGCCUGAUGGc- -3'
miRNA:   3'- -GCGGau-GUGGGUC-GCCGGGCUGCUua -5'
26714 3' -59.8 NC_005808.1 + 39785 0.71 0.197496
Target:  5'- cCGCgaGCACCU---GGCCCGACGAAUc -3'
miRNA:   3'- -GCGgaUGUGGGucgCCGGGCUGCUUA- -5'
26714 3' -59.8 NC_005808.1 + 28183 0.7 0.208243
Target:  5'- uGCCcACGCCCAGCaGGUgCGGCGc-- -3'
miRNA:   3'- gCGGaUGUGGGUCG-CCGgGCUGCuua -5'
26714 3' -59.8 NC_005808.1 + 17236 0.7 0.213803
Target:  5'- gCGCCU--GCCCGGUGGCCgGcuauGCGAAc -3'
miRNA:   3'- -GCGGAugUGGGUCGCCGGgC----UGCUUa -5'
26714 3' -59.8 NC_005808.1 + 1767 0.7 0.219491
Target:  5'- gGCCUGCGCCUGGCGcGUCgGGCcGAUa -3'
miRNA:   3'- gCGGAUGUGGGUCGC-CGGgCUGcUUA- -5'
26714 3' -59.8 NC_005808.1 + 29869 0.7 0.224719
Target:  5'- gCGCg-GCACCCAGCaccaacgGGCCgGGCGAc- -3'
miRNA:   3'- -GCGgaUGUGGGUCG-------CCGGgCUGCUua -5'
26714 3' -59.8 NC_005808.1 + 8173 0.7 0.225307
Target:  5'- gCGCgUGCGCCCGGauGCugCCGGCGAu- -3'
miRNA:   3'- -GCGgAUGUGGGUCgcCG--GGCUGCUua -5'
26714 3' -59.8 NC_005808.1 + 26535 0.69 0.243542
Target:  5'- gCGCC-GCGCgCGGCGGCCaCGugcGCGAAc -3'
miRNA:   3'- -GCGGaUGUGgGUCGCCGG-GC---UGCUUa -5'
26714 3' -59.8 NC_005808.1 + 18389 0.69 0.262988
Target:  5'- uGCCgaugGCGCCgguGGCGGCCacguCGGCGAAg -3'
miRNA:   3'- gCGGa---UGUGGg--UCGCCGG----GCUGCUUa -5'
26714 3' -59.8 NC_005808.1 + 34034 0.69 0.267704
Target:  5'- gGCCUacgACGCCCAggaugaggucgagcGCGGCCUG-CGAu- -3'
miRNA:   3'- gCGGA---UGUGGGU--------------CGCCGGGCuGCUua -5'
26714 3' -59.8 NC_005808.1 + 42400 0.69 0.269746
Target:  5'- uCGCCguguCGCCCGGCaGCgUGACGGu- -3'
miRNA:   3'- -GCGGau--GUGGGUCGcCGgGCUGCUua -5'
26714 3' -59.8 NC_005808.1 + 16115 0.68 0.283678
Target:  5'- cCGgCUGCACgUCGGUGGcCCCGACGu-- -3'
miRNA:   3'- -GCgGAUGUG-GGUCGCC-GGGCUGCuua -5'
26714 3' -59.8 NC_005808.1 + 7729 0.68 0.297435
Target:  5'- aGCgcACGCUCGGCGGCCggcuugcuguuggCGACGAAg -3'
miRNA:   3'- gCGgaUGUGGGUCGCCGG-------------GCUGCUUa -5'
26714 3' -59.8 NC_005808.1 + 38022 0.68 0.298173
Target:  5'- uCGCCUggcGCACCgAGCaGcGCCuCGGCGAc- -3'
miRNA:   3'- -GCGGA---UGUGGgUCG-C-CGG-GCUGCUua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.