miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26714 3' -59.8 NC_005808.1 + 38022 0.68 0.298173
Target:  5'- uCGCCUggcGCACCgAGCaGcGCCuCGGCGAc- -3'
miRNA:   3'- -GCGGA---UGUGGgUCG-C-CGG-GCUGCUua -5'
26714 3' -59.8 NC_005808.1 + 38842 0.67 0.320981
Target:  5'- aGgCUACGUCCAGCGGCggcaCCGACGu-- -3'
miRNA:   3'- gCgGAUGUGGGUCGCCG----GGCUGCuua -5'
26714 3' -59.8 NC_005808.1 + 40376 0.67 0.320981
Target:  5'- cCGCCUGCugCgC-GUGGugcuaCCCGACGAGg -3'
miRNA:   3'- -GCGGAUGugG-GuCGCC-----GGGCUGCUUa -5'
26714 3' -59.8 NC_005808.1 + 29587 0.67 0.328868
Target:  5'- uCGCCacUGCGCUgcGCGGCCUGuACGAGa -3'
miRNA:   3'- -GCGG--AUGUGGguCGCCGGGC-UGCUUa -5'
26714 3' -59.8 NC_005808.1 + 31301 0.67 0.328868
Target:  5'- aGCCUGgcgacCGCgUGGUGGCCCGGCuGGAa -3'
miRNA:   3'- gCGGAU-----GUGgGUCGCCGGGCUG-CUUa -5'
26714 3' -59.8 NC_005808.1 + 9202 0.67 0.328868
Target:  5'- gGCCU--GCUCGGCGGCgCGGCGc-- -3'
miRNA:   3'- gCGGAugUGGGUCGCCGgGCUGCuua -5'
26714 3' -59.8 NC_005808.1 + 28244 0.67 0.336898
Target:  5'- cCGCCUuccaggACACCgcgaacCAGCaGGCCCGGCa--- -3'
miRNA:   3'- -GCGGA------UGUGG------GUCG-CCGGGCUGcuua -5'
26714 3' -59.8 NC_005808.1 + 26905 0.67 0.336898
Target:  5'- gGCggACGCCUucuucgucgauAGCGGCCUGACGu-- -3'
miRNA:   3'- gCGgaUGUGGG-----------UCGCCGGGCUGCuua -5'
26714 3' -59.8 NC_005808.1 + 40351 0.67 0.336898
Target:  5'- gCGUCgaACugCCGGCcaaGGCCCGGCGu-- -3'
miRNA:   3'- -GCGGa-UGugGGUCG---CCGGGCUGCuua -5'
26714 3' -59.8 NC_005808.1 + 33189 0.67 0.345069
Target:  5'- aGaCCUGCaaGCCC-GCGGCCUGcGCGAc- -3'
miRNA:   3'- gC-GGAUG--UGGGuCGCCGGGC-UGCUua -5'
26714 3' -59.8 NC_005808.1 + 18832 0.67 0.345069
Target:  5'- aGCCgcgGCgcaucgGCCCGGUGGCgCCGGCa--- -3'
miRNA:   3'- gCGGa--UG------UGGGUCGCCG-GGCUGcuua -5'
26714 3' -59.8 NC_005808.1 + 4118 0.67 0.345069
Target:  5'- aGCCUGCGCUgCAGCGuugcuuCCCGGCGcAUa -3'
miRNA:   3'- gCGGAUGUGG-GUCGCc-----GGGCUGCuUA- -5'
26714 3' -59.8 NC_005808.1 + 11515 0.67 0.353382
Target:  5'- gCGCCUGCGCUgGcGUgaGGCCCuGCGAGc -3'
miRNA:   3'- -GCGGAUGUGGgU-CG--CCGGGcUGCUUa -5'
26714 3' -59.8 NC_005808.1 + 32266 0.67 0.353382
Target:  5'- aCGCCgcagcgACGgCUA-CGGCCUGGCGAAa -3'
miRNA:   3'- -GCGGa-----UGUgGGUcGCCGGGCUGCUUa -5'
26714 3' -59.8 NC_005808.1 + 18010 0.67 0.353382
Target:  5'- gGCaaggACACgCCGGaCGGCCCGACc--- -3'
miRNA:   3'- gCGga--UGUG-GGUC-GCCGGGCUGcuua -5'
26714 3' -59.8 NC_005808.1 + 18440 0.67 0.360984
Target:  5'- aGuCCUGCACCgAaaacgugacggucGCGGCgCCGGCGGc- -3'
miRNA:   3'- gC-GGAUGUGGgU-------------CGCCG-GGCUGCUua -5'
26714 3' -59.8 NC_005808.1 + 17967 0.67 0.361835
Target:  5'- cCGCCgGCACgCCAuGUGGUUCGACGu-- -3'
miRNA:   3'- -GCGGaUGUG-GGU-CGCCGGGCUGCuua -5'
26714 3' -59.8 NC_005808.1 + 11509 0.67 0.361835
Target:  5'- gGCCUGCACCgaggugagCAGCGGCaCCaGGCc--- -3'
miRNA:   3'- gCGGAUGUGG--------GUCGCCG-GG-CUGcuua -5'
26714 3' -59.8 NC_005808.1 + 604 0.66 0.37916
Target:  5'- cCGCCUGCgggucGgCCAGCaGCgCCGugGAc- -3'
miRNA:   3'- -GCGGAUG-----UgGGUCGcCG-GGCugCUua -5'
26714 3' -59.8 NC_005808.1 + 16847 0.66 0.385354
Target:  5'- cCGCCcagcagcGCGCCCAGCGuGCUgccgccggugaggaCGACGAc- -3'
miRNA:   3'- -GCGGa------UGUGGGUCGC-CGG--------------GCUGCUua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.