miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26714 3' -59.8 NC_005808.1 + 18440 0.67 0.360984
Target:  5'- aGuCCUGCACCgAaaacgugacggucGCGGCgCCGGCGGc- -3'
miRNA:   3'- gC-GGAUGUGGgU-------------CGCCG-GGCUGCUua -5'
26714 3' -59.8 NC_005808.1 + 18832 0.67 0.345069
Target:  5'- aGCCgcgGCgcaucgGCCCGGUGGCgCCGGCa--- -3'
miRNA:   3'- gCGGa--UG------UGGGUCGCCG-GGCUGcuua -5'
26714 3' -59.8 NC_005808.1 + 21210 0.66 0.406169
Target:  5'- uGCUcGCgcagGCCCAGCGcGCCauugCGACGAAc -3'
miRNA:   3'- gCGGaUG----UGGGUCGC-CGG----GCUGCUUa -5'
26714 3' -59.8 NC_005808.1 + 21859 0.66 0.397032
Target:  5'- gCGCCUcuacgGCGCCagCAGCaugucGGCCUGAUGGGg -3'
miRNA:   3'- -GCGGA-----UGUGG--GUCG-----CCGGGCUGCUUa -5'
26714 3' -59.8 NC_005808.1 + 22942 0.66 0.399759
Target:  5'- uGCCUACucuuucaccaccaACCCGacgcuggccgaugucGCGGCCCGcAUGAc- -3'
miRNA:   3'- gCGGAUG-------------UGGGU---------------CGCCGGGC-UGCUua -5'
26714 3' -59.8 NC_005808.1 + 23092 0.66 0.397032
Target:  5'- uCGCCccgACGCCaaCGGCGGCgcccaCGGCGAc- -3'
miRNA:   3'- -GCGGa--UGUGG--GUCGCCGg----GCUGCUua -5'
26714 3' -59.8 NC_005808.1 + 24150 0.71 0.177449
Target:  5'- gCGCCUG-GCCCAGCGcCUCGACGGc- -3'
miRNA:   3'- -GCGGAUgUGGGUCGCcGGGCUGCUua -5'
26714 3' -59.8 NC_005808.1 + 24927 0.73 0.127786
Target:  5'- uCGCCUACGCCCAGCccgCCGACGc-- -3'
miRNA:   3'- -GCGGAUGUGGGUCGccgGGCUGCuua -5'
26714 3' -59.8 NC_005808.1 + 25079 0.66 0.397032
Target:  5'- uCGCC---ACCCAGCGcagcgcGCCCGGCGc-- -3'
miRNA:   3'- -GCGGaugUGGGUCGC------CGGGCUGCuua -5'
26714 3' -59.8 NC_005808.1 + 26249 0.66 0.388028
Target:  5'- uCGCCgaaggcacggGCACCCGcCGGCCUGGuCGGc- -3'
miRNA:   3'- -GCGGa---------UGUGGGUcGCCGGGCU-GCUua -5'
26714 3' -59.8 NC_005808.1 + 26535 0.69 0.243542
Target:  5'- gCGCC-GCGCgCGGCGGCCaCGugcGCGAAc -3'
miRNA:   3'- -GCGGaUGUGgGUCGCCGG-GC---UGCUUa -5'
26714 3' -59.8 NC_005808.1 + 26905 0.67 0.336898
Target:  5'- gGCggACGCCUucuucgucgauAGCGGCCUGACGu-- -3'
miRNA:   3'- gCGgaUGUGGG-----------UCGCCGGGCUGCuua -5'
26714 3' -59.8 NC_005808.1 + 27422 0.71 0.177449
Target:  5'- gCGCCUggcgcaccGCGCCCGGCGGCCgcaGGCc--- -3'
miRNA:   3'- -GCGGA--------UGUGGGUCGCCGGg--CUGcuua -5'
26714 3' -59.8 NC_005808.1 + 28183 0.7 0.208243
Target:  5'- uGCCcACGCCCAGCaGGUgCGGCGc-- -3'
miRNA:   3'- gCGGaUGUGGGUCG-CCGgGCUGCuua -5'
26714 3' -59.8 NC_005808.1 + 28244 0.67 0.336898
Target:  5'- cCGCCUuccaggACACCgcgaacCAGCaGGCCCGGCa--- -3'
miRNA:   3'- -GCGGA------UGUGG------GUCG-CCGGGCUGcuua -5'
26714 3' -59.8 NC_005808.1 + 29416 0.72 0.168119
Target:  5'- aCGCCggccaaggGCGCCCAGCGcGgCCGACa--- -3'
miRNA:   3'- -GCGGa-------UGUGGGUCGC-CgGGCUGcuua -5'
26714 3' -59.8 NC_005808.1 + 29587 0.67 0.328868
Target:  5'- uCGCCacUGCGCUgcGCGGCCUGuACGAGa -3'
miRNA:   3'- -GCGG--AUGUGGguCGCCGGGC-UGCUUa -5'
26714 3' -59.8 NC_005808.1 + 29869 0.7 0.224719
Target:  5'- gCGCg-GCACCCAGCaccaacgGGCCgGGCGAc- -3'
miRNA:   3'- -GCGgaUGUGGGUCG-------CCGGgCUGCUua -5'
26714 3' -59.8 NC_005808.1 + 30147 0.66 0.397032
Target:  5'- gGCCUGCACCgcgucggacauCAGCGGCaguUGGCGc-- -3'
miRNA:   3'- gCGGAUGUGG-----------GUCGCCGg--GCUGCuua -5'
26714 3' -59.8 NC_005808.1 + 30998 0.73 0.131378
Target:  5'- gGCaCUGCuGCCCGGCGGCcagCCGGCGGc- -3'
miRNA:   3'- gCG-GAUG-UGGGUCGCCG---GGCUGCUua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.