miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26714 3' -59.8 NC_005808.1 + 23092 0.66 0.397032
Target:  5'- uCGCCccgACGCCaaCGGCGGCgcccaCGGCGAc- -3'
miRNA:   3'- -GCGGa--UGUGG--GUCGCCGg----GCUGCUua -5'
26714 3' -59.8 NC_005808.1 + 4118 0.67 0.345069
Target:  5'- aGCCUGCGCUgCAGCGuugcuuCCCGGCGcAUa -3'
miRNA:   3'- gCGGAUGUGG-GUCGCc-----GGGCUGCuUA- -5'
26714 3' -59.8 NC_005808.1 + 11515 0.67 0.353382
Target:  5'- gCGCCUGCGCUgGcGUgaGGCCCuGCGAGc -3'
miRNA:   3'- -GCGGAUGUGGgU-CG--CCGGGcUGCUUa -5'
26714 3' -59.8 NC_005808.1 + 18440 0.67 0.360984
Target:  5'- aGuCCUGCACCgAaaacgugacggucGCGGCgCCGGCGGc- -3'
miRNA:   3'- gC-GGAUGUGGgU-------------CGCCG-GGCUGCUua -5'
26714 3' -59.8 NC_005808.1 + 604 0.66 0.37916
Target:  5'- cCGCCUGCgggucGgCCAGCaGCgCCGugGAc- -3'
miRNA:   3'- -GCGGAUG-----UgGGUCGcCG-GGCugCUua -5'
26714 3' -59.8 NC_005808.1 + 11376 0.66 0.388028
Target:  5'- uCGCCcgGCACCuCGGUGGCgacCUGAUGGGc -3'
miRNA:   3'- -GCGGa-UGUGG-GUCGCCG---GGCUGCUUa -5'
26714 3' -59.8 NC_005808.1 + 26249 0.66 0.388028
Target:  5'- uCGCCgaaggcacggGCACCCGcCGGCCUGGuCGGc- -3'
miRNA:   3'- -GCGGa---------UGUGGGUcGCCGGGCU-GCUua -5'
26714 3' -59.8 NC_005808.1 + 30147 0.66 0.397032
Target:  5'- gGCCUGCACCgcgucggacauCAGCGGCaguUGGCGc-- -3'
miRNA:   3'- gCGGAUGUGG-----------GUCGCCGg--GCUGCuua -5'
26714 3' -59.8 NC_005808.1 + 25079 0.66 0.397032
Target:  5'- uCGCC---ACCCAGCGcagcgcGCCCGGCGc-- -3'
miRNA:   3'- -GCGGaugUGGGUCGC------CGGGCUGCuua -5'
26714 3' -59.8 NC_005808.1 + 40351 0.67 0.336898
Target:  5'- gCGUCgaACugCCGGCcaaGGCCCGGCGu-- -3'
miRNA:   3'- -GCGGa-UGugGGUCG---CCGGGCUGCuua -5'
26714 3' -59.8 NC_005808.1 + 9202 0.67 0.328868
Target:  5'- gGCCU--GCUCGGCGGCgCGGCGc-- -3'
miRNA:   3'- gCGGAugUGGGUCGCCGgGCUGCuua -5'
26714 3' -59.8 NC_005808.1 + 31301 0.67 0.328868
Target:  5'- aGCCUGgcgacCGCgUGGUGGCCCGGCuGGAa -3'
miRNA:   3'- gCGGAU-----GUGgGUCGCCGGGCUG-CUUa -5'
26714 3' -59.8 NC_005808.1 + 27422 0.71 0.177449
Target:  5'- gCGCCUggcgcaccGCGCCCGGCGGCCgcaGGCc--- -3'
miRNA:   3'- -GCGGA--------UGUGGGUCGCCGGg--CUGcuua -5'
26714 3' -59.8 NC_005808.1 + 38508 0.71 0.187237
Target:  5'- gCGCCgccCACCUGGcCGGCCUGAUGGc- -3'
miRNA:   3'- -GCGGau-GUGGGUC-GCCGGGCUGCUua -5'
26714 3' -59.8 NC_005808.1 + 39785 0.71 0.197496
Target:  5'- cCGCgaGCACCU---GGCCCGACGAAUc -3'
miRNA:   3'- -GCGgaUGUGGGucgCCGGGCUGCUUA- -5'
26714 3' -59.8 NC_005808.1 + 28183 0.7 0.208243
Target:  5'- uGCCcACGCCCAGCaGGUgCGGCGc-- -3'
miRNA:   3'- gCGGaUGUGGGUCG-CCGgGCUGCuua -5'
26714 3' -59.8 NC_005808.1 + 8173 0.7 0.225307
Target:  5'- gCGCgUGCGCCCGGauGCugCCGGCGAu- -3'
miRNA:   3'- -GCGgAUGUGGGUCgcCG--GGCUGCUua -5'
26714 3' -59.8 NC_005808.1 + 18389 0.69 0.262988
Target:  5'- uGCCgaugGCGCCgguGGCGGCCacguCGGCGAAg -3'
miRNA:   3'- gCGGa---UGUGGg--UCGCCGG----GCUGCUUa -5'
26714 3' -59.8 NC_005808.1 + 16115 0.68 0.283678
Target:  5'- cCGgCUGCACgUCGGUGGcCCCGACGu-- -3'
miRNA:   3'- -GCgGAUGUG-GGUCGCC-GGGCUGCuua -5'
26714 3' -59.8 NC_005808.1 + 38022 0.68 0.298173
Target:  5'- uCGCCUggcGCACCgAGCaGcGCCuCGGCGAc- -3'
miRNA:   3'- -GCGGA---UGUGGgUCG-C-CGG-GCUGCUua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.