Results 1 - 20 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26714 | 3' | -59.8 | NC_005808.1 | + | 40376 | 0.67 | 0.320981 |
Target: 5'- cCGCCUGCugCgC-GUGGugcuaCCCGACGAGg -3' miRNA: 3'- -GCGGAUGugG-GuCGCC-----GGGCUGCUUa -5' |
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26714 | 3' | -59.8 | NC_005808.1 | + | 21210 | 0.66 | 0.406169 |
Target: 5'- uGCUcGCgcagGCCCAGCGcGCCauugCGACGAAc -3' miRNA: 3'- gCGGaUG----UGGGUCGC-CGG----GCUGCUUa -5' |
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26714 | 3' | -59.8 | NC_005808.1 | + | 5736 | 0.66 | 0.406169 |
Target: 5'- uCGCacagauCGCCCAGCGcGCCgGgcaGCGAGUg -3' miRNA: 3'- -GCGgau---GUGGGUCGC-CGGgC---UGCUUA- -5' |
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26714 | 3' | -59.8 | NC_005808.1 | + | 17967 | 0.67 | 0.361835 |
Target: 5'- cCGCCgGCACgCCAuGUGGUUCGACGu-- -3' miRNA: 3'- -GCGGaUGUG-GGU-CGCCGGGCUGCuua -5' |
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26714 | 3' | -59.8 | NC_005808.1 | + | 21859 | 0.66 | 0.397032 |
Target: 5'- gCGCCUcuacgGCGCCagCAGCaugucGGCCUGAUGGGg -3' miRNA: 3'- -GCGGA-----UGUGG--GUCG-----CCGGGCUGCUUa -5' |
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26714 | 3' | -59.8 | NC_005808.1 | + | 11581 | 0.66 | 0.388028 |
Target: 5'- uGCCU-CGgCCGGCaaGCCCGugGAc- -3' miRNA: 3'- gCGGAuGUgGGUCGc-CGGGCugCUua -5' |
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26714 | 3' | -59.8 | NC_005808.1 | + | 16847 | 0.66 | 0.385354 |
Target: 5'- cCGCCcagcagcGCGCCCAGCGuGCUgccgccggugaggaCGACGAc- -3' miRNA: 3'- -GCGGa------UGUGGGUCGC-CGG--------------GCUGCUua -5' |
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26714 | 3' | -59.8 | NC_005808.1 | + | 22942 | 0.66 | 0.399759 |
Target: 5'- uGCCUACucuuucaccaccaACCCGacgcuggccgaugucGCGGCCCGcAUGAc- -3' miRNA: 3'- gCGGAUG-------------UGGGU---------------CGCCGGGC-UGCUua -5' |
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26714 | 3' | -59.8 | NC_005808.1 | + | 26905 | 0.67 | 0.336898 |
Target: 5'- gGCggACGCCUucuucgucgauAGCGGCCUGACGu-- -3' miRNA: 3'- gCGgaUGUGGG-----------UCGCCGGGCUGCuua -5' |
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26714 | 3' | -59.8 | NC_005808.1 | + | 29587 | 0.67 | 0.328868 |
Target: 5'- uCGCCacUGCGCUgcGCGGCCUGuACGAGa -3' miRNA: 3'- -GCGG--AUGUGGguCGCCGGGC-UGCUUa -5' |
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26714 | 3' | -59.8 | NC_005808.1 | + | 28244 | 0.67 | 0.336898 |
Target: 5'- cCGCCUuccaggACACCgcgaacCAGCaGGCCCGGCa--- -3' miRNA: 3'- -GCGGA------UGUGG------GUCG-CCGGGCUGcuua -5' |
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26714 | 3' | -59.8 | NC_005808.1 | + | 38842 | 0.67 | 0.320981 |
Target: 5'- aGgCUACGUCCAGCGGCggcaCCGACGu-- -3' miRNA: 3'- gCgGAUGUGGGUCGCCG----GGCUGCuua -5' |
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26714 | 3' | -59.8 | NC_005808.1 | + | 2726 | 0.68 | 0.298173 |
Target: 5'- gGCCggACGCUUgagcGCGGCCCGGCGc-- -3' miRNA: 3'- gCGGa-UGUGGGu---CGCCGGGCUGCuua -5' |
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26714 | 3' | -59.8 | NC_005808.1 | + | 7729 | 0.68 | 0.297435 |
Target: 5'- aGCgcACGCUCGGCGGCCggcuugcuguuggCGACGAAg -3' miRNA: 3'- gCGgaUGUGGGUCGCCGG-------------GCUGCUUa -5' |
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26714 | 3' | -59.8 | NC_005808.1 | + | 42400 | 0.69 | 0.269746 |
Target: 5'- uCGCCguguCGCCCGGCaGCgUGACGGu- -3' miRNA: 3'- -GCGGau--GUGGGUCGcCGgGCUGCUua -5' |
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26714 | 3' | -59.8 | NC_005808.1 | + | 34034 | 0.69 | 0.267704 |
Target: 5'- gGCCUacgACGCCCAggaugaggucgagcGCGGCCUG-CGAu- -3' miRNA: 3'- gCGGA---UGUGGGU--------------CGCCGGGCuGCUua -5' |
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26714 | 3' | -59.8 | NC_005808.1 | + | 26535 | 0.69 | 0.243542 |
Target: 5'- gCGCC-GCGCgCGGCGGCCaCGugcGCGAAc -3' miRNA: 3'- -GCGGaUGUGgGUCGCCGG-GC---UGCUUa -5' |
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26714 | 3' | -59.8 | NC_005808.1 | + | 29869 | 0.7 | 0.224719 |
Target: 5'- gCGCg-GCACCCAGCaccaacgGGCCgGGCGAc- -3' miRNA: 3'- -GCGgaUGUGGGUCG-------CCGGgCUGCUua -5' |
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26714 | 3' | -59.8 | NC_005808.1 | + | 1767 | 0.7 | 0.219491 |
Target: 5'- gGCCUGCGCCUGGCGcGUCgGGCcGAUa -3' miRNA: 3'- gCGGAUGUGGGUCGC-CGGgCUGcUUA- -5' |
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26714 | 3' | -59.8 | NC_005808.1 | + | 17236 | 0.7 | 0.213803 |
Target: 5'- gCGCCU--GCCCGGUGGCCgGcuauGCGAAc -3' miRNA: 3'- -GCGGAugUGGGUCGCCGGgC----UGCUUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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