miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26714 3' -59.8 NC_005808.1 + 40376 0.67 0.320981
Target:  5'- cCGCCUGCugCgC-GUGGugcuaCCCGACGAGg -3'
miRNA:   3'- -GCGGAUGugG-GuCGCC-----GGGCUGCUUa -5'
26714 3' -59.8 NC_005808.1 + 21210 0.66 0.406169
Target:  5'- uGCUcGCgcagGCCCAGCGcGCCauugCGACGAAc -3'
miRNA:   3'- gCGGaUG----UGGGUCGC-CGG----GCUGCUUa -5'
26714 3' -59.8 NC_005808.1 + 5736 0.66 0.406169
Target:  5'- uCGCacagauCGCCCAGCGcGCCgGgcaGCGAGUg -3'
miRNA:   3'- -GCGgau---GUGGGUCGC-CGGgC---UGCUUA- -5'
26714 3' -59.8 NC_005808.1 + 17967 0.67 0.361835
Target:  5'- cCGCCgGCACgCCAuGUGGUUCGACGu-- -3'
miRNA:   3'- -GCGGaUGUG-GGU-CGCCGGGCUGCuua -5'
26714 3' -59.8 NC_005808.1 + 21859 0.66 0.397032
Target:  5'- gCGCCUcuacgGCGCCagCAGCaugucGGCCUGAUGGGg -3'
miRNA:   3'- -GCGGA-----UGUGG--GUCG-----CCGGGCUGCUUa -5'
26714 3' -59.8 NC_005808.1 + 11581 0.66 0.388028
Target:  5'- uGCCU-CGgCCGGCaaGCCCGugGAc- -3'
miRNA:   3'- gCGGAuGUgGGUCGc-CGGGCugCUua -5'
26714 3' -59.8 NC_005808.1 + 16847 0.66 0.385354
Target:  5'- cCGCCcagcagcGCGCCCAGCGuGCUgccgccggugaggaCGACGAc- -3'
miRNA:   3'- -GCGGa------UGUGGGUCGC-CGG--------------GCUGCUua -5'
26714 3' -59.8 NC_005808.1 + 22942 0.66 0.399759
Target:  5'- uGCCUACucuuucaccaccaACCCGacgcuggccgaugucGCGGCCCGcAUGAc- -3'
miRNA:   3'- gCGGAUG-------------UGGGU---------------CGCCGGGC-UGCUua -5'
26714 3' -59.8 NC_005808.1 + 26905 0.67 0.336898
Target:  5'- gGCggACGCCUucuucgucgauAGCGGCCUGACGu-- -3'
miRNA:   3'- gCGgaUGUGGG-----------UCGCCGGGCUGCuua -5'
26714 3' -59.8 NC_005808.1 + 29587 0.67 0.328868
Target:  5'- uCGCCacUGCGCUgcGCGGCCUGuACGAGa -3'
miRNA:   3'- -GCGG--AUGUGGguCGCCGGGC-UGCUUa -5'
26714 3' -59.8 NC_005808.1 + 28244 0.67 0.336898
Target:  5'- cCGCCUuccaggACACCgcgaacCAGCaGGCCCGGCa--- -3'
miRNA:   3'- -GCGGA------UGUGG------GUCG-CCGGGCUGcuua -5'
26714 3' -59.8 NC_005808.1 + 38842 0.67 0.320981
Target:  5'- aGgCUACGUCCAGCGGCggcaCCGACGu-- -3'
miRNA:   3'- gCgGAUGUGGGUCGCCG----GGCUGCuua -5'
26714 3' -59.8 NC_005808.1 + 2726 0.68 0.298173
Target:  5'- gGCCggACGCUUgagcGCGGCCCGGCGc-- -3'
miRNA:   3'- gCGGa-UGUGGGu---CGCCGGGCUGCuua -5'
26714 3' -59.8 NC_005808.1 + 7729 0.68 0.297435
Target:  5'- aGCgcACGCUCGGCGGCCggcuugcuguuggCGACGAAg -3'
miRNA:   3'- gCGgaUGUGGGUCGCCGG-------------GCUGCUUa -5'
26714 3' -59.8 NC_005808.1 + 42400 0.69 0.269746
Target:  5'- uCGCCguguCGCCCGGCaGCgUGACGGu- -3'
miRNA:   3'- -GCGGau--GUGGGUCGcCGgGCUGCUua -5'
26714 3' -59.8 NC_005808.1 + 34034 0.69 0.267704
Target:  5'- gGCCUacgACGCCCAggaugaggucgagcGCGGCCUG-CGAu- -3'
miRNA:   3'- gCGGA---UGUGGGU--------------CGCCGGGCuGCUua -5'
26714 3' -59.8 NC_005808.1 + 26535 0.69 0.243542
Target:  5'- gCGCC-GCGCgCGGCGGCCaCGugcGCGAAc -3'
miRNA:   3'- -GCGGaUGUGgGUCGCCGG-GC---UGCUUa -5'
26714 3' -59.8 NC_005808.1 + 29869 0.7 0.224719
Target:  5'- gCGCg-GCACCCAGCaccaacgGGCCgGGCGAc- -3'
miRNA:   3'- -GCGgaUGUGGGUCG-------CCGGgCUGCUua -5'
26714 3' -59.8 NC_005808.1 + 1767 0.7 0.219491
Target:  5'- gGCCUGCGCCUGGCGcGUCgGGCcGAUa -3'
miRNA:   3'- gCGGAUGUGGGUCGC-CGGgCUGcUUA- -5'
26714 3' -59.8 NC_005808.1 + 17236 0.7 0.213803
Target:  5'- gCGCCU--GCCCGGUGGCCgGcuauGCGAAc -3'
miRNA:   3'- -GCGGAugUGGGUCGCCGGgC----UGCUUa -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.