Results 1 - 20 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26714 | 3' | -59.8 | NC_005808.1 | + | 42400 | 0.69 | 0.269746 |
Target: 5'- uCGCCguguCGCCCGGCaGCgUGACGGu- -3' miRNA: 3'- -GCGGau--GUGGGUCGcCGgGCUGCUua -5' |
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26714 | 3' | -59.8 | NC_005808.1 | + | 40376 | 0.67 | 0.320981 |
Target: 5'- cCGCCUGCugCgC-GUGGugcuaCCCGACGAGg -3' miRNA: 3'- -GCGGAUGugG-GuCGCC-----GGGCUGCUUa -5' |
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26714 | 3' | -59.8 | NC_005808.1 | + | 40351 | 0.67 | 0.336898 |
Target: 5'- gCGUCgaACugCCGGCcaaGGCCCGGCGu-- -3' miRNA: 3'- -GCGGa-UGugGGUCG---CCGGGCUGCuua -5' |
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26714 | 3' | -59.8 | NC_005808.1 | + | 39785 | 0.71 | 0.197496 |
Target: 5'- cCGCgaGCACCU---GGCCCGACGAAUc -3' miRNA: 3'- -GCGgaUGUGGGucgCCGGGCUGCUUA- -5' |
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26714 | 3' | -59.8 | NC_005808.1 | + | 38842 | 0.67 | 0.320981 |
Target: 5'- aGgCUACGUCCAGCGGCggcaCCGACGu-- -3' miRNA: 3'- gCgGAUGUGGGUCGCCG----GGCUGCuua -5' |
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26714 | 3' | -59.8 | NC_005808.1 | + | 38508 | 0.71 | 0.187237 |
Target: 5'- gCGCCgccCACCUGGcCGGCCUGAUGGc- -3' miRNA: 3'- -GCGGau-GUGGGUC-GCCGGGCUGCUua -5' |
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26714 | 3' | -59.8 | NC_005808.1 | + | 38022 | 0.68 | 0.298173 |
Target: 5'- uCGCCUggcGCACCgAGCaGcGCCuCGGCGAc- -3' miRNA: 3'- -GCGGA---UGUGGgUCG-C-CGG-GCUGCUua -5' |
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26714 | 3' | -59.8 | NC_005808.1 | + | 34034 | 0.69 | 0.267704 |
Target: 5'- gGCCUacgACGCCCAggaugaggucgagcGCGGCCUG-CGAu- -3' miRNA: 3'- gCGGA---UGUGGGU--------------CGCCGGGCuGCUua -5' |
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26714 | 3' | -59.8 | NC_005808.1 | + | 33189 | 0.67 | 0.345069 |
Target: 5'- aGaCCUGCaaGCCC-GCGGCCUGcGCGAc- -3' miRNA: 3'- gC-GGAUG--UGGGuCGCCGGGC-UGCUua -5' |
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26714 | 3' | -59.8 | NC_005808.1 | + | 32266 | 0.67 | 0.353382 |
Target: 5'- aCGCCgcagcgACGgCUA-CGGCCUGGCGAAa -3' miRNA: 3'- -GCGGa-----UGUgGGUcGCCGGGCUGCUUa -5' |
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26714 | 3' | -59.8 | NC_005808.1 | + | 31301 | 0.67 | 0.328868 |
Target: 5'- aGCCUGgcgacCGCgUGGUGGCCCGGCuGGAa -3' miRNA: 3'- gCGGAU-----GUGgGUCGCCGGGCUG-CUUa -5' |
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26714 | 3' | -59.8 | NC_005808.1 | + | 30998 | 0.73 | 0.131378 |
Target: 5'- gGCaCUGCuGCCCGGCGGCcagCCGGCGGc- -3' miRNA: 3'- gCG-GAUG-UGGGUCGCCG---GGCUGCUua -5' |
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26714 | 3' | -59.8 | NC_005808.1 | + | 30147 | 0.66 | 0.397032 |
Target: 5'- gGCCUGCACCgcgucggacauCAGCGGCaguUGGCGc-- -3' miRNA: 3'- gCGGAUGUGG-----------GUCGCCGg--GCUGCuua -5' |
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26714 | 3' | -59.8 | NC_005808.1 | + | 29869 | 0.7 | 0.224719 |
Target: 5'- gCGCg-GCACCCAGCaccaacgGGCCgGGCGAc- -3' miRNA: 3'- -GCGgaUGUGGGUCG-------CCGGgCUGCUua -5' |
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26714 | 3' | -59.8 | NC_005808.1 | + | 29587 | 0.67 | 0.328868 |
Target: 5'- uCGCCacUGCGCUgcGCGGCCUGuACGAGa -3' miRNA: 3'- -GCGG--AUGUGGguCGCCGGGC-UGCUUa -5' |
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26714 | 3' | -59.8 | NC_005808.1 | + | 29416 | 0.72 | 0.168119 |
Target: 5'- aCGCCggccaaggGCGCCCAGCGcGgCCGACa--- -3' miRNA: 3'- -GCGGa-------UGUGGGUCGC-CgGGCUGcuua -5' |
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26714 | 3' | -59.8 | NC_005808.1 | + | 28244 | 0.67 | 0.336898 |
Target: 5'- cCGCCUuccaggACACCgcgaacCAGCaGGCCCGGCa--- -3' miRNA: 3'- -GCGGA------UGUGG------GUCG-CCGGGCUGcuua -5' |
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26714 | 3' | -59.8 | NC_005808.1 | + | 28183 | 0.7 | 0.208243 |
Target: 5'- uGCCcACGCCCAGCaGGUgCGGCGc-- -3' miRNA: 3'- gCGGaUGUGGGUCG-CCGgGCUGCuua -5' |
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26714 | 3' | -59.8 | NC_005808.1 | + | 27422 | 0.71 | 0.177449 |
Target: 5'- gCGCCUggcgcaccGCGCCCGGCGGCCgcaGGCc--- -3' miRNA: 3'- -GCGGA--------UGUGGGUCGCCGGg--CUGcuua -5' |
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26714 | 3' | -59.8 | NC_005808.1 | + | 26905 | 0.67 | 0.336898 |
Target: 5'- gGCggACGCCUucuucgucgauAGCGGCCUGACGu-- -3' miRNA: 3'- gCGgaUGUGGG-----------UCGCCGGGCUGCuua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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