miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26728 3' -62.2 NC_005808.1 + 345 1.09 0.000182
Target:  5'- gCGUCGCGCAGCAGGCCGUCCGCCAGGc -3'
miRNA:   3'- -GCAGCGCGUCGUCCGGCAGGCGGUCC- -5'
26728 3' -62.2 NC_005808.1 + 21427 0.78 0.043262
Target:  5'- gGcCGCGCAGCAGGCCGcgCUGuugaaCCAGGg -3'
miRNA:   3'- gCaGCGCGUCGUCCGGCa-GGC-----GGUCC- -5'
26728 3' -62.2 NC_005808.1 + 4381 0.76 0.062374
Target:  5'- --aUGCGCAGCcaGGcGCCGUCgCGCCGGGc -3'
miRNA:   3'- gcaGCGCGUCG--UC-CGGCAG-GCGGUCC- -5'
26728 3' -62.2 NC_005808.1 + 24552 0.74 0.092026
Target:  5'- gGUCGCGCAGCgcggcgauggcgAGGCCGgccaCgGUCGGGc -3'
miRNA:   3'- gCAGCGCGUCG------------UCCGGCa---GgCGGUCC- -5'
26728 3' -62.2 NC_005808.1 + 11351 0.74 0.094334
Target:  5'- aCGUCGCccggcucGUAGCuGGGCCG-CgCGCCGGGg -3'
miRNA:   3'- -GCAGCG-------CGUCG-UCCGGCaG-GCGGUCC- -5'
26728 3' -62.2 NC_005808.1 + 27349 0.72 0.117708
Target:  5'- -uUUGUGCGGCAGGCCGacccUCUGCCGu- -3'
miRNA:   3'- gcAGCGCGUCGUCCGGC----AGGCGGUcc -5'
26728 3' -62.2 NC_005808.1 + 24669 0.72 0.120943
Target:  5'- uGUCGCGCccgccGCGGGCCacGUCCacgcCCAGGc -3'
miRNA:   3'- gCAGCGCGu----CGUCCGG--CAGGc---GGUCC- -5'
26728 3' -62.2 NC_005808.1 + 8979 0.72 0.124261
Target:  5'- -uUCGCaGCGGU-GGCCGUgCCGCCAGcGg -3'
miRNA:   3'- gcAGCG-CGUCGuCCGGCA-GGCGGUC-C- -5'
26728 3' -62.2 NC_005808.1 + 25301 0.72 0.13257
Target:  5'- gGUCGUGCGGCcGGCCcugccaccggcgcucGUC-GCCGGGa -3'
miRNA:   3'- gCAGCGCGUCGuCCGG---------------CAGgCGGUCC- -5'
26728 3' -62.2 NC_005808.1 + 32518 0.71 0.145998
Target:  5'- --cCGCGCccguGCAGGCUGgugaugCCGgCCAGGa -3'
miRNA:   3'- gcaGCGCGu---CGUCCGGCa-----GGC-GGUCC- -5'
26728 3' -62.2 NC_005808.1 + 5896 0.7 0.166706
Target:  5'- gGUCGC-CAGCGuGGUgagUGUgCCGCCGGGa -3'
miRNA:   3'- gCAGCGcGUCGU-CCG---GCA-GGCGGUCC- -5'
26728 3' -62.2 NC_005808.1 + 8409 0.7 0.185131
Target:  5'- uGUCGgGCAGCGaGCaGUUCGCgGGGg -3'
miRNA:   3'- gCAGCgCGUCGUcCGgCAGGCGgUCC- -5'
26728 3' -62.2 NC_005808.1 + 2787 0.69 0.188535
Target:  5'- aCGUUGCGCAGguGcGCCcacuucgucgauucGUCgGgCCAGGu -3'
miRNA:   3'- -GCAGCGCGUCguC-CGG--------------CAGgC-GGUCC- -5'
26728 3' -62.2 NC_005808.1 + 40836 0.69 0.19001
Target:  5'- cCGaCGCGCcaggcGCAGGCCGgccaugaCCGCCcGGu -3'
miRNA:   3'- -GCaGCGCGu----CGUCCGGCa------GGCGGuCC- -5'
26728 3' -62.2 NC_005808.1 + 11607 0.69 0.191993
Target:  5'- gGUCGCGCgugAGCAGaucguccaccgucacGCCGaaguagUCCGCCAGc -3'
miRNA:   3'- gCAGCGCG---UCGUC---------------CGGC------AGGCGGUCc -5'
26728 3' -62.2 NC_005808.1 + 23738 0.69 0.195002
Target:  5'- uCGguggCGCGCAGCAGcgccauGCCGgcgCCaCCGGGc -3'
miRNA:   3'- -GCa---GCGCGUCGUC------CGGCa--GGcGGUCC- -5'
26728 3' -62.2 NC_005808.1 + 32004 0.69 0.200108
Target:  5'- --aUGCGguGCAGGCUG-CgCGCCuGGg -3'
miRNA:   3'- gcaGCGCguCGUCCGGCaG-GCGGuCC- -5'
26728 3' -62.2 NC_005808.1 + 10889 0.69 0.20533
Target:  5'- cCG-CGCGCGGCGGGCUG---GUCAGGc -3'
miRNA:   3'- -GCaGCGCGUCGUCCGGCaggCGGUCC- -5'
26728 3' -62.2 NC_005808.1 + 12008 0.69 0.21067
Target:  5'- aCGUCGgccaGCAGCGcGGCCGUggCCgGCgAGGu -3'
miRNA:   3'- -GCAGCg---CGUCGU-CCGGCA--GG-CGgUCC- -5'
26728 3' -62.2 NC_005808.1 + 1107 0.68 0.22741
Target:  5'- uGUCGCGCGGCAuGUCGcgcaUCgGCCcGGu -3'
miRNA:   3'- gCAGCGCGUCGUcCGGC----AGgCGGuCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.