miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26728 3' -62.2 NC_005808.1 + 345 1.09 0.000182
Target:  5'- gCGUCGCGCAGCAGGCCGUCCGCCAGGc -3'
miRNA:   3'- -GCAGCGCGUCGUCCGGCAGGCGGUCC- -5'
26728 3' -62.2 NC_005808.1 + 1107 0.68 0.22741
Target:  5'- uGUCGCGCGGCAuGUCGcgcaUCgGCCcGGu -3'
miRNA:   3'- gCAGCGCGUCGUcCGGC----AGgCGGuCC- -5'
26728 3' -62.2 NC_005808.1 + 2132 0.66 0.320735
Target:  5'- -aUCGUGCAGCA-GCCGgucaaccgcgCCGCCGu- -3'
miRNA:   3'- gcAGCGCGUCGUcCGGCa---------GGCGGUcc -5'
26728 3' -62.2 NC_005808.1 + 2232 0.68 0.245262
Target:  5'- --aCGCGCAGCAGGCgG--CGCguGGc -3'
miRNA:   3'- gcaGCGCGUCGUCCGgCagGCGguCC- -5'
26728 3' -62.2 NC_005808.1 + 2787 0.69 0.188535
Target:  5'- aCGUUGCGCAGguGcGCCcacuucgucgauucGUCgGgCCAGGu -3'
miRNA:   3'- -GCAGCGCGUCguC-CGG--------------CAGgC-GGUCC- -5'
26728 3' -62.2 NC_005808.1 + 3874 0.66 0.336195
Target:  5'- cCGUCGCu--GUAGGCCGcgCUGCCGu- -3'
miRNA:   3'- -GCAGCGcguCGUCCGGCa-GGCGGUcc -5'
26728 3' -62.2 NC_005808.1 + 4381 0.76 0.062374
Target:  5'- --aUGCGCAGCcaGGcGCCGUCgCGCCGGGc -3'
miRNA:   3'- gcaGCGCGUCG--UC-CGGCAG-GCGGUCC- -5'
26728 3' -62.2 NC_005808.1 + 4414 0.68 0.231474
Target:  5'- aG-CGUGCGGCagucguAGGUCGUacccggccgcaacaCCGCCAGGc -3'
miRNA:   3'- gCaGCGCGUCG------UCCGGCA--------------GGCGGUCC- -5'
26728 3' -62.2 NC_005808.1 + 4528 0.67 0.284439
Target:  5'- aCGUgGCGUgcugGGC-GGUCGUgCCGCCGcGGa -3'
miRNA:   3'- -GCAgCGCG----UCGuCCGGCA-GGCGGU-CC- -5'
26728 3' -62.2 NC_005808.1 + 5240 0.68 0.239185
Target:  5'- -uUCGCGCAGUucGGCCGgCagGUCGGGg -3'
miRNA:   3'- gcAGCGCGUCGu-CCGGCaGg-CGGUCC- -5'
26728 3' -62.2 NC_005808.1 + 5334 0.67 0.277581
Target:  5'- aCGUgGCGCAGCAuGGCauCGcgCUGCguGGc -3'
miRNA:   3'- -GCAgCGCGUCGU-CCG--GCa-GGCGguCC- -5'
26728 3' -62.2 NC_005808.1 + 5751 0.67 0.298555
Target:  5'- ---aGCGCGcCGGGCagcgaGUgCGCCAGGg -3'
miRNA:   3'- gcagCGCGUcGUCCGg----CAgGCGGUCC- -5'
26728 3' -62.2 NC_005808.1 + 5896 0.7 0.166706
Target:  5'- gGUCGC-CAGCGuGGUgagUGUgCCGCCGGGa -3'
miRNA:   3'- gCAGCGcGUCGU-CCG---GCA-GGCGGUCC- -5'
26728 3' -62.2 NC_005808.1 + 6377 0.67 0.283747
Target:  5'- aCGUCG-GCAaucaggcGCAGGCCGgCCgGCCcGGu -3'
miRNA:   3'- -GCAGCgCGU-------CGUCCGGCaGG-CGGuCC- -5'
26728 3' -62.2 NC_005808.1 + 6466 0.68 0.245262
Target:  5'- cCGUCGCGCAGgAacuGCaCG-CCGCgCAGGc -3'
miRNA:   3'- -GCAGCGCGUCgUc--CG-GCaGGCG-GUCC- -5'
26728 3' -62.2 NC_005808.1 + 8221 0.67 0.29143
Target:  5'- aGUCGCGCuGGUcGGCgG-CCGUCAGc -3'
miRNA:   3'- gCAGCGCG-UCGuCCGgCaGGCGGUCc -5'
26728 3' -62.2 NC_005808.1 + 8390 0.67 0.277581
Target:  5'- -cUCGCGCuGGCugcguaGCCaGUCgGCCAGGg -3'
miRNA:   3'- gcAGCGCG-UCGuc----CGG-CAGgCGGUCC- -5'
26728 3' -62.2 NC_005808.1 + 8409 0.7 0.185131
Target:  5'- uGUCGgGCAGCGaGCaGUUCGCgGGGg -3'
miRNA:   3'- gCAGCgCGUCGUcCGgCAGGCGgUCC- -5'
26728 3' -62.2 NC_005808.1 + 8979 0.72 0.124261
Target:  5'- -uUCGCaGCGGU-GGCCGUgCCGCCAGcGg -3'
miRNA:   3'- gcAGCG-CGUCGuCCGGCA-GGCGGUC-C- -5'
26728 3' -62.2 NC_005808.1 + 10478 0.68 0.253984
Target:  5'- aGUCGCGCAGCaccggcccgaacGGGCCGugcucUugaucgaacugcugaCCGCCGGc -3'
miRNA:   3'- gCAGCGCGUCG------------UCCGGC-----A---------------GGCGGUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.