miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26728 3' -62.2 NC_005808.1 + 42210 0.66 0.313207
Target:  5'- aGUCGCGC-GCuGGCCGcgcucaaUCGgCAGGc -3'
miRNA:   3'- gCAGCGCGuCGuCCGGCa------GGCgGUCC- -5'
26728 3' -62.2 NC_005808.1 + 10478 0.68 0.253984
Target:  5'- aGUCGCGCAGCaccggcccgaacGGGCCGugcucUugaucgaacugcugaCCGCCGGc -3'
miRNA:   3'- gCAGCGCGUCG------------UCCGGC-----A---------------GGCGGUCc -5'
26728 3' -62.2 NC_005808.1 + 33843 0.67 0.266884
Target:  5'- cCG-CGCGCaaauuccauguugacGGUAGcGCCGcgcCCGCCGGGc -3'
miRNA:   3'- -GCaGCGCG---------------UCGUC-CGGCa--GGCGGUCC- -5'
26728 3' -62.2 NC_005808.1 + 15386 0.67 0.270856
Target:  5'- gCGUC-CGCGuGCGGGCCGgcgaagaUGCCGGa -3'
miRNA:   3'- -GCAGcGCGU-CGUCCGGCag-----GCGGUCc -5'
26728 3' -62.2 NC_005808.1 + 8390 0.67 0.277581
Target:  5'- -cUCGCGCuGGCugcguaGCCaGUCgGCCAGGg -3'
miRNA:   3'- gcAGCGCG-UCGuc----CGG-CAGgCGGUCC- -5'
26728 3' -62.2 NC_005808.1 + 6377 0.67 0.283747
Target:  5'- aCGUCG-GCAaucaggcGCAGGCCGgCCgGCCcGGu -3'
miRNA:   3'- -GCAGCgCGU-------CGUCCGGCaGG-CGGuCC- -5'
26728 3' -62.2 NC_005808.1 + 4528 0.67 0.284439
Target:  5'- aCGUgGCGUgcugGGC-GGUCGUgCCGCCGcGGa -3'
miRNA:   3'- -GCAgCGCG----UCGuCCGGCA-GGCGGU-CC- -5'
26728 3' -62.2 NC_005808.1 + 8221 0.67 0.29143
Target:  5'- aGUCGCGCuGGUcGGCgG-CCGUCAGc -3'
miRNA:   3'- gCAGCGCG-UCGuCCGgCaGGCGGUCc -5'
26728 3' -62.2 NC_005808.1 + 18412 0.66 0.305813
Target:  5'- aCGUCgGCGaAGguGGCguUGUCCGCCGa- -3'
miRNA:   3'- -GCAG-CGCgUCguCCG--GCAGGCGGUcc -5'
26728 3' -62.2 NC_005808.1 + 2232 0.68 0.245262
Target:  5'- --aCGCGCAGCAGGCgG--CGCguGGc -3'
miRNA:   3'- gcaGCGCGUCGUCCGgCagGCGguCC- -5'
26728 3' -62.2 NC_005808.1 + 34858 0.68 0.239185
Target:  5'- uCGUCGCcaaCAGCAaGCCGgCCGCCGa- -3'
miRNA:   3'- -GCAGCGc--GUCGUcCGGCaGGCGGUcc -5'
26728 3' -62.2 NC_005808.1 + 1107 0.68 0.22741
Target:  5'- uGUCGCGCGGCAuGUCGcgcaUCgGCCcGGu -3'
miRNA:   3'- gCAGCGCGUCGUcCGGC----AGgCGGuCC- -5'
26728 3' -62.2 NC_005808.1 + 24552 0.74 0.092026
Target:  5'- gGUCGCGCAGCgcggcgauggcgAGGCCGgccaCgGUCGGGc -3'
miRNA:   3'- gCAGCGCGUCG------------UCCGGCa---GgCGGUCC- -5'
26728 3' -62.2 NC_005808.1 + 24669 0.72 0.120943
Target:  5'- uGUCGCGCccgccGCGGGCCacGUCCacgcCCAGGc -3'
miRNA:   3'- gCAGCGCGu----CGUCCGG--CAGGc---GGUCC- -5'
26728 3' -62.2 NC_005808.1 + 25301 0.72 0.13257
Target:  5'- gGUCGUGCGGCcGGCCcugccaccggcgcucGUC-GCCGGGa -3'
miRNA:   3'- gCAGCGCGUCGuCCGG---------------CAGgCGGUCC- -5'
26728 3' -62.2 NC_005808.1 + 32518 0.71 0.145998
Target:  5'- --cCGCGCccguGCAGGCUGgugaugCCGgCCAGGa -3'
miRNA:   3'- gcaGCGCGu---CGUCCGGCa-----GGC-GGUCC- -5'
26728 3' -62.2 NC_005808.1 + 5896 0.7 0.166706
Target:  5'- gGUCGC-CAGCGuGGUgagUGUgCCGCCGGGa -3'
miRNA:   3'- gCAGCGcGUCGU-CCG---GCA-GGCGGUCC- -5'
26728 3' -62.2 NC_005808.1 + 40836 0.69 0.19001
Target:  5'- cCGaCGCGCcaggcGCAGGCCGgccaugaCCGCCcGGu -3'
miRNA:   3'- -GCaGCGCGu----CGUCCGGCa------GGCGGuCC- -5'
26728 3' -62.2 NC_005808.1 + 23738 0.69 0.195002
Target:  5'- uCGguggCGCGCAGCAGcgccauGCCGgcgCCaCCGGGc -3'
miRNA:   3'- -GCa---GCGCGUCGUC------CGGCa--GGcGGUCC- -5'
26728 3' -62.2 NC_005808.1 + 12008 0.69 0.21067
Target:  5'- aCGUCGgccaGCAGCGcGGCCGUggCCgGCgAGGu -3'
miRNA:   3'- -GCAGCg---CGUCGU-CCGGCA--GG-CGgUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.