Results 21 - 40 of 145 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26732 | 5' | -60.5 | NC_005808.1 | + | 9050 | 0.73 | 0.119207 |
Target: 5'- -aGCGGUGGCCGuGcCGgauucgccagcggugGCCGUGCCGCg -3' miRNA: 3'- caCGUCGUCGGC-CaGU---------------UGGCGCGGCG- -5' |
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26732 | 5' | -60.5 | NC_005808.1 | + | 9002 | 0.73 | 0.119207 |
Target: 5'- -aGCGGUGGCCGuGcCGgauucgccagcggugGCCGUGCCGCg -3' miRNA: 3'- caCGUCGUCGGC-CaGU---------------UGGCGCGGCG- -5' |
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26732 | 5' | -60.5 | NC_005808.1 | + | 9146 | 0.73 | 0.119207 |
Target: 5'- -aGCGGUGGCCGuGcCGcgauagccagcggugGCCGUGCCGCg -3' miRNA: 3'- caCGUCGUCGGC-CaGU---------------UGGCGCGGCG- -5' |
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26732 | 5' | -60.5 | NC_005808.1 | + | 9194 | 0.73 | 0.119207 |
Target: 5'- -aGCGGUGGCCGuGcCGcgauagccagcggugGCCGUGCCGCg -3' miRNA: 3'- caCGUCGUCGGC-CaGU---------------UGGCGCGGCG- -5' |
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26732 | 5' | -60.5 | NC_005808.1 | + | 39846 | 0.73 | 0.12121 |
Target: 5'- -gGCAGUGGUCGG-CAcgcccgagcagcGCCGgGCCGCg -3' miRNA: 3'- caCGUCGUCGGCCaGU------------UGGCgCGGCG- -5' |
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26732 | 5' | -60.5 | NC_005808.1 | + | 19029 | 0.73 | 0.124618 |
Target: 5'- gGUGCGGUAGCCcuGGUagCGGCCGCcgGCgGCg -3' miRNA: 3'- -CACGUCGUCGG--CCA--GUUGGCG--CGgCG- -5' |
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26732 | 5' | -60.5 | NC_005808.1 | + | 25763 | 0.72 | 0.131703 |
Target: 5'- cGUGCAuccgaacuauGC-GCCGcGUgAACUGCGCCGCc -3' miRNA: 3'- -CACGU----------CGuCGGC-CAgUUGGCGCGGCG- -5' |
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26732 | 5' | -60.5 | NC_005808.1 | + | 28554 | 0.72 | 0.135384 |
Target: 5'- uUGCGGCcGCCGGcC-AUCGCGgCGCg -3' miRNA: 3'- cACGUCGuCGGCCaGuUGGCGCgGCG- -5' |
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26732 | 5' | -60.5 | NC_005808.1 | + | 14025 | 0.72 | 0.135384 |
Target: 5'- cUGcCGGUGGCCGa-CGugCGCGCCGCg -3' miRNA: 3'- cAC-GUCGUCGGCcaGUugGCGCGGCG- -5' |
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26732 | 5' | -60.5 | NC_005808.1 | + | 27832 | 0.72 | 0.143029 |
Target: 5'- cUGCccGCGGUgGcGcCGGCCGCGCCGCu -3' miRNA: 3'- cACGu-CGUCGgC-CaGUUGGCGCGGCG- -5' |
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26732 | 5' | -60.5 | NC_005808.1 | + | 7764 | 0.72 | 0.146998 |
Target: 5'- uUGCAGCA-CCGGcgCGAuCUGCGCCGg -3' miRNA: 3'- cACGUCGUcGGCCa-GUU-GGCGCGGCg -5' |
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26732 | 5' | -60.5 | NC_005808.1 | + | 28149 | 0.72 | 0.146998 |
Target: 5'- -aGCAGCuuGCCGGuggucagaUCGACCaCGCCGUu -3' miRNA: 3'- caCGUCGu-CGGCC--------AGUUGGcGCGGCG- -5' |
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26732 | 5' | -60.5 | NC_005808.1 | + | 8961 | 0.72 | 0.149836 |
Target: 5'- -aGCGGUGGCCGuGcCGgauucgcagcggugGCCGUGCCGCc -3' miRNA: 3'- caCGUCGUCGGC-CaGU--------------UGGCGCGGCG- -5' |
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26732 | 5' | -60.5 | NC_005808.1 | + | 21822 | 0.72 | 0.152724 |
Target: 5'- uUGCAGCGGCgGGUUgcucuuguagucgauGGCCuGCGCCuuGCg -3' miRNA: 3'- cACGUCGUCGgCCAG---------------UUGG-CGCGG--CG- -5' |
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26732 | 5' | -60.5 | NC_005808.1 | + | 21420 | 0.71 | 0.155239 |
Target: 5'- -aGCAGCAgGCCGcG-CAgcagGCCGCGCUGUu -3' miRNA: 3'- caCGUCGU-CGGC-CaGU----UGGCGCGGCG- -5' |
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26732 | 5' | -60.5 | NC_005808.1 | + | 39065 | 0.71 | 0.155239 |
Target: 5'- -gGCGGCAGCUGGcacuacacgUCGAacucggguucUCGCGCUGCg -3' miRNA: 3'- caCGUCGUCGGCC---------AGUU----------GGCGCGGCG- -5' |
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26732 | 5' | -60.5 | NC_005808.1 | + | 14359 | 0.71 | 0.159514 |
Target: 5'- -cGCGGUguccuggaaGGCgGGggCAuCCGCGCCGCg -3' miRNA: 3'- caCGUCG---------UCGgCCa-GUuGGCGCGGCG- -5' |
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26732 | 5' | -60.5 | NC_005808.1 | + | 29107 | 0.71 | 0.159514 |
Target: 5'- cGUGCGggacuuGCuGCCGGUCAcGCgCGCgagGCCGCa -3' miRNA: 3'- -CACGU------CGuCGGCCAGU-UG-GCG---CGGCG- -5' |
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26732 | 5' | -60.5 | NC_005808.1 | + | 28198 | 0.71 | 0.163453 |
Target: 5'- gGUGCGGC-GCCuuguccaGGUCGGCCaCGCCGa -3' miRNA: 3'- -CACGUCGuCGG-------CCAGUUGGcGCGGCg -5' |
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26732 | 5' | -60.5 | NC_005808.1 | + | 31293 | 0.71 | 0.163896 |
Target: 5'- -gGCAGCgaAGCCuGG-CGACCGCGUgGUg -3' miRNA: 3'- caCGUCG--UCGG-CCaGUUGGCGCGgCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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