miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26738 5' -60.2 NC_005808.1 + 7173 1.09 0.000285
Target:  5'- gCCCGACGCGCUGACGCCCUGACGCAGc -3'
miRNA:   3'- -GGGCUGCGCGACUGCGGGACUGCGUC- -5'
26738 5' -60.2 NC_005808.1 + 30088 0.77 0.07275
Target:  5'- cCUCGACGCGCUGuucaugaaaaACGCCaCUGuGCGCGGc -3'
miRNA:   3'- -GGGCUGCGCGAC----------UGCGG-GAC-UGCGUC- -5'
26738 5' -60.2 NC_005808.1 + 24320 0.72 0.161547
Target:  5'- aCCGGCcCGCUGACGgCCggcaaguucucGGCGCAGg -3'
miRNA:   3'- gGGCUGcGCGACUGCgGGa----------CUGCGUC- -5'
26738 5' -60.2 NC_005808.1 + 9874 0.72 0.165915
Target:  5'- aCCGGCGCGCUGcuucuCGgCCaGGCGCGu -3'
miRNA:   3'- gGGCUGCGCGACu----GCgGGaCUGCGUc -5'
26738 5' -60.2 NC_005808.1 + 12435 0.72 0.170387
Target:  5'- aCUGGCGCcaacugccGCUGAUGUCC-GACGCGGu -3'
miRNA:   3'- gGGCUGCG--------CGACUGCGGGaCUGCGUC- -5'
26738 5' -60.2 NC_005808.1 + 27438 0.72 0.179658
Target:  5'- gCCCGGCG-GCcGcAgGCCCUGGCGCuGg -3'
miRNA:   3'- -GGGCUGCgCGaC-UgCGGGACUGCGuC- -5'
26738 5' -60.2 NC_005808.1 + 21777 0.71 0.184459
Target:  5'- gCCCGGCacgGUGCUGAUGUCCUGGuucuugGCGGa -3'
miRNA:   3'- -GGGCUG---CGCGACUGCGGGACUg-----CGUC- -5'
26738 5' -60.2 NC_005808.1 + 13015 0.71 0.194401
Target:  5'- aCCG-CGCGCcugGGCGCggccgaCCUGACGCGa -3'
miRNA:   3'- gGGCuGCGCGa--CUGCG------GGACUGCGUc -5'
26738 5' -60.2 NC_005808.1 + 29309 0.71 0.199546
Target:  5'- cCCCGGCGCGCUGcaaucgGCGCUgaaaGACGCc- -3'
miRNA:   3'- -GGGCUGCGCGAC------UGCGGga--CUGCGuc -5'
26738 5' -60.2 NC_005808.1 + 31911 0.71 0.199546
Target:  5'- gCCGuGCGCGCUGcCGUCaaGACGCAc -3'
miRNA:   3'- gGGC-UGCGCGACuGCGGgaCUGCGUc -5'
26738 5' -60.2 NC_005808.1 + 38213 0.71 0.199547
Target:  5'- gCCCGGCGCGaC-GGCGCCUggcuGCGCAu -3'
miRNA:   3'- -GGGCUGCGC-GaCUGCGGGac--UGCGUc -5'
26738 5' -60.2 NC_005808.1 + 15527 0.71 0.20481
Target:  5'- uUCGACcagcagGgGCUGACGCCCUGA-GCAu -3'
miRNA:   3'- gGGCUG------CgCGACUGCGGGACUgCGUc -5'
26738 5' -60.2 NC_005808.1 + 9981 0.71 0.20481
Target:  5'- aCCgCGGCGuCGC-GGC-CCUUGACGCGGg -3'
miRNA:   3'- -GG-GCUGC-GCGaCUGcGGGACUGCGUC- -5'
26738 5' -60.2 NC_005808.1 + 23095 0.7 0.221325
Target:  5'- cCCCGACGCcaacgGC-GGCGCCCacGGCGaCAGc -3'
miRNA:   3'- -GGGCUGCG-----CGaCUGCGGGa-CUGC-GUC- -5'
26738 5' -60.2 NC_005808.1 + 36038 0.7 0.221325
Target:  5'- uCCUcaagGAUGCGCUGACGC-CUGGCGauuCGGg -3'
miRNA:   3'- -GGG----CUGCGCGACUGCGgGACUGC---GUC- -5'
26738 5' -60.2 NC_005808.1 + 17518 0.7 0.232955
Target:  5'- gCCgGGCGCGCUG-CGCUggGugGCGa -3'
miRNA:   3'- -GGgCUGCGCGACuGCGGgaCugCGUc -5'
26738 5' -60.2 NC_005808.1 + 12199 0.7 0.238962
Target:  5'- aCCGGCccGCGCUGcCuGCCCcuggucggGACGCAGc -3'
miRNA:   3'- gGGCUG--CGCGACuG-CGGGa-------CUGCGUC- -5'
26738 5' -60.2 NC_005808.1 + 36861 0.69 0.257757
Target:  5'- gCCCGGCGCGCUgGGCGaUCUG-UGCGa -3'
miRNA:   3'- -GGGCUGCGCGA-CUGCgGGACuGCGUc -5'
26738 5' -60.2 NC_005808.1 + 12726 0.69 0.257757
Target:  5'- gCCCGGCccguugGUGCUGggugccGCGCCCaGACGCu- -3'
miRNA:   3'- -GGGCUG------CGCGAC------UGCGGGaCUGCGuc -5'
26738 5' -60.2 NC_005808.1 + 42198 0.69 0.263627
Target:  5'- aCCGcCGUGCUGcugguggGCGCCCUGG-GCAu -3'
miRNA:   3'- gGGCuGCGCGAC-------UGCGGGACUgCGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.