miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26738 5' -60.2 NC_005808.1 + 32098 0.66 0.396054
Target:  5'- -aCGGcCGCGUUGcucaACGCCCUGGcCGCu- -3'
miRNA:   3'- ggGCU-GCGCGAC----UGCGGGACU-GCGuc -5'
26738 5' -60.2 NC_005808.1 + 13176 0.68 0.306291
Target:  5'- gUCGGcCGCGCUgGGCGCCCUuGGC-CGGc -3'
miRNA:   3'- gGGCU-GCGCGA-CUGCGGGA-CUGcGUC- -5'
26738 5' -60.2 NC_005808.1 + 16114 0.68 0.321385
Target:  5'- aCCGGCuGCaCgucgGugGCCCcGACGUAGg -3'
miRNA:   3'- gGGCUG-CGcGa---CugCGGGaCUGCGUC- -5'
26738 5' -60.2 NC_005808.1 + 42190 0.68 0.329139
Target:  5'- cCCgCGACGUGCUGcucaacagucGCGCgCUGGcCGCGc -3'
miRNA:   3'- -GG-GCUGCGCGAC----------UGCGgGACU-GCGUc -5'
26738 5' -60.2 NC_005808.1 + 8168 0.67 0.345057
Target:  5'- uCCCuGCGCGU--GCGCCCgGAUGCu- -3'
miRNA:   3'- -GGGcUGCGCGacUGCGGGaCUGCGuc -5'
26738 5' -60.2 NC_005808.1 + 20735 0.67 0.369955
Target:  5'- gCCGACauGCuGCUGGCGCCgUagaGGCGCu- -3'
miRNA:   3'- gGGCUG--CG-CGACUGCGGgA---CUGCGuc -5'
26738 5' -60.2 NC_005808.1 + 36029 0.67 0.369955
Target:  5'- gCCGAgGCGgaUGGCaaGCCCU-ACGCGGg -3'
miRNA:   3'- gGGCUgCGCg-ACUG--CGGGAcUGCGUC- -5'
26738 5' -60.2 NC_005808.1 + 37213 0.67 0.378523
Target:  5'- uCgCGGCGCGCaccagUGACauaaCCCUGgGCGCGGu -3'
miRNA:   3'- -GgGCUGCGCG-----ACUGc---GGGAC-UGCGUC- -5'
26738 5' -60.2 NC_005808.1 + 28315 0.67 0.38112
Target:  5'- aCUCGGCGCGCUcGGCgucggacucgaugGCCUUGgccucgucgggcagcGCGCGGa -3'
miRNA:   3'- -GGGCUGCGCGA-CUG-------------CGGGAC---------------UGCGUC- -5'
26738 5' -60.2 NC_005808.1 + 36795 0.68 0.30555
Target:  5'- gCCCGACuauccgcugGCGCUgccgcgauggcggGACacgauggucaagGCCCUGGCGCAc -3'
miRNA:   3'- -GGGCUG---------CGCGA-------------CUG------------CGGGACUGCGUc -5'
26738 5' -60.2 NC_005808.1 + 34666 0.69 0.284677
Target:  5'- gCCGugGCGUgaaggugGACGCCgaG-CGCAa -3'
miRNA:   3'- gGGCugCGCGa------CUGCGGgaCuGCGUc -5'
26738 5' -60.2 NC_005808.1 + 18094 0.69 0.264286
Target:  5'- gCCGGCGCGaaccagGACGCCUUcGCGCc- -3'
miRNA:   3'- gGGCUGCGCga----CUGCGGGAcUGCGuc -5'
26738 5' -60.2 NC_005808.1 + 9874 0.72 0.165915
Target:  5'- aCCGGCGCGCUGcuucuCGgCCaGGCGCGu -3'
miRNA:   3'- gGGCUGCGCGACu----GCgGGaCUGCGUc -5'
26738 5' -60.2 NC_005808.1 + 27438 0.72 0.179658
Target:  5'- gCCCGGCG-GCcGcAgGCCCUGGCGCuGg -3'
miRNA:   3'- -GGGCUGCgCGaC-UgCGGGACUGCGuC- -5'
26738 5' -60.2 NC_005808.1 + 21777 0.71 0.184459
Target:  5'- gCCCGGCacgGUGCUGAUGUCCUGGuucuugGCGGa -3'
miRNA:   3'- -GGGCUG---CGCGACUGCGGGACUg-----CGUC- -5'
26738 5' -60.2 NC_005808.1 + 38213 0.71 0.199547
Target:  5'- gCCCGGCGCGaC-GGCGCCUggcuGCGCAu -3'
miRNA:   3'- -GGGCUGCGC-GaCUGCGGGac--UGCGUc -5'
26738 5' -60.2 NC_005808.1 + 23095 0.7 0.221325
Target:  5'- cCCCGACGCcaacgGC-GGCGCCCacGGCGaCAGc -3'
miRNA:   3'- -GGGCUGCG-----CGaCUGCGGGa-CUGC-GUC- -5'
26738 5' -60.2 NC_005808.1 + 12199 0.7 0.238962
Target:  5'- aCCGGCccGCGCUGcCuGCCCcuggucggGACGCAGc -3'
miRNA:   3'- gGGCUG--CGCGACuG-CGGGa-------CUGCGUC- -5'
26738 5' -60.2 NC_005808.1 + 12726 0.69 0.257757
Target:  5'- gCCCGGCccguugGUGCUGggugccGCGCCCaGACGCu- -3'
miRNA:   3'- -GGGCUG------CGCGAC------UGCGGGaCUGCGuc -5'
26738 5' -60.2 NC_005808.1 + 36861 0.69 0.257757
Target:  5'- gCCCGGCGCGCUgGGCGaUCUG-UGCGa -3'
miRNA:   3'- -GGGCUGCGCGA-CUGCgGGACuGCGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.