Results 21 - 40 of 61 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26738 | 5' | -60.2 | NC_005808.1 | + | 23095 | 0.7 | 0.221325 |
Target: 5'- cCCCGACGCcaacgGC-GGCGCCCacGGCGaCAGc -3' miRNA: 3'- -GGGCUGCG-----CGaCUGCGGGa-CUGC-GUC- -5' |
|||||||
26738 | 5' | -60.2 | NC_005808.1 | + | 12199 | 0.7 | 0.238962 |
Target: 5'- aCCGGCccGCGCUGcCuGCCCcuggucggGACGCAGc -3' miRNA: 3'- gGGCUG--CGCGACuG-CGGGa-------CUGCGUC- -5' |
|||||||
26738 | 5' | -60.2 | NC_005808.1 | + | 12726 | 0.69 | 0.257757 |
Target: 5'- gCCCGGCccguugGUGCUGggugccGCGCCCaGACGCu- -3' miRNA: 3'- -GGGCUG------CGCGAC------UGCGGGaCUGCGuc -5' |
|||||||
26738 | 5' | -60.2 | NC_005808.1 | + | 36861 | 0.69 | 0.257757 |
Target: 5'- gCCCGGCGCGCUgGGCGaUCUG-UGCGa -3' miRNA: 3'- -GGGCUGCGCGA-CUGCgGGACuGCGUc -5' |
|||||||
26738 | 5' | -60.2 | NC_005808.1 | + | 18094 | 0.69 | 0.264286 |
Target: 5'- gCCGGCGCGaaccagGACGCCUUcGCGCc- -3' miRNA: 3'- gGGCUGCGCga----CUGCGGGAcUGCGuc -5' |
|||||||
26738 | 5' | -60.2 | NC_005808.1 | + | 34666 | 0.69 | 0.284677 |
Target: 5'- gCCGugGCGUgaaggugGACGCCgaG-CGCAa -3' miRNA: 3'- gGGCugCGCGa------CUGCGGgaCuGCGUc -5' |
|||||||
26738 | 5' | -60.2 | NC_005808.1 | + | 36795 | 0.68 | 0.30555 |
Target: 5'- gCCCGACuauccgcugGCGCUgccgcgauggcggGACacgauggucaagGCCCUGGCGCAc -3' miRNA: 3'- -GGGCUG---------CGCGA-------------CUG------------CGGGACUGCGUc -5' |
|||||||
26738 | 5' | -60.2 | NC_005808.1 | + | 36038 | 0.7 | 0.221325 |
Target: 5'- uCCUcaagGAUGCGCUGACGC-CUGGCGauuCGGg -3' miRNA: 3'- -GGG----CUGCGCGACUGCGgGACUGC---GUC- -5' |
|||||||
26738 | 5' | -60.2 | NC_005808.1 | + | 17518 | 0.7 | 0.232955 |
Target: 5'- gCCgGGCGCGCUG-CGCUggGugGCGa -3' miRNA: 3'- -GGgCUGCGCGACuGCGGgaCugCGUc -5' |
|||||||
26738 | 5' | -60.2 | NC_005808.1 | + | 42198 | 0.69 | 0.263627 |
Target: 5'- aCCGcCGUGCUGcugguggGCGCCCUGG-GCAu -3' miRNA: 3'- gGGCuGCGCGAC-------UGCGGGACUgCGUc -5' |
|||||||
26738 | 5' | -60.2 | NC_005808.1 | + | 36364 | 0.69 | 0.270948 |
Target: 5'- aCCGGCGUGC--AgGCCCUGgccgaaggcaaaACGCAGa -3' miRNA: 3'- gGGCUGCGCGacUgCGGGAC------------UGCGUC- -5' |
|||||||
26738 | 5' | -60.2 | NC_005808.1 | + | 15139 | 0.68 | 0.296773 |
Target: 5'- gCgCGGCGCGCUGGCauaccagcgccaggGCCUgcggccgccgGGCGCGGu -3' miRNA: 3'- -GgGCUGCGCGACUG--------------CGGGa---------CUGCGUC- -5' |
|||||||
26738 | 5' | -60.2 | NC_005808.1 | + | 15527 | 0.71 | 0.20481 |
Target: 5'- uUCGACcagcagGgGCUGACGCCCUGA-GCAu -3' miRNA: 3'- gGGCUG------CgCGACUGCGGGACUgCGUc -5' |
|||||||
26738 | 5' | -60.2 | NC_005808.1 | + | 9981 | 0.71 | 0.20481 |
Target: 5'- aCCgCGGCGuCGC-GGC-CCUUGACGCGGg -3' miRNA: 3'- -GG-GCUGC-GCGaCUGcGGGACUGCGUC- -5' |
|||||||
26738 | 5' | -60.2 | NC_005808.1 | + | 31911 | 0.71 | 0.199546 |
Target: 5'- gCCGuGCGCGCUGcCGUCaaGACGCAc -3' miRNA: 3'- gGGC-UGCGCGACuGCGGgaCUGCGUc -5' |
|||||||
26738 | 5' | -60.2 | NC_005808.1 | + | 29309 | 0.71 | 0.199546 |
Target: 5'- cCCCGGCGCGCUGcaaucgGCGCUgaaaGACGCc- -3' miRNA: 3'- -GGGCUGCGCGAC------UGCGGga--CUGCGuc -5' |
|||||||
26738 | 5' | -60.2 | NC_005808.1 | + | 13015 | 0.71 | 0.194401 |
Target: 5'- aCCG-CGCGCcugGGCGCggccgaCCUGACGCGa -3' miRNA: 3'- gGGCuGCGCGa--CUGCG------GGACUGCGUc -5' |
|||||||
26738 | 5' | -60.2 | NC_005808.1 | + | 12435 | 0.72 | 0.170387 |
Target: 5'- aCUGGCGCcaacugccGCUGAUGUCC-GACGCGGu -3' miRNA: 3'- gGGCUGCG--------CGACUGCGGGaCUGCGUC- -5' |
|||||||
26738 | 5' | -60.2 | NC_005808.1 | + | 24320 | 0.72 | 0.161547 |
Target: 5'- aCCGGCcCGCUGACGgCCggcaaguucucGGCGCAGg -3' miRNA: 3'- gGGCUGcGCGACUGCgGGa----------CUGCGUC- -5' |
|||||||
26738 | 5' | -60.2 | NC_005808.1 | + | 18094 | 0.66 | 0.436409 |
Target: 5'- aUCGGCGUG--GGCGCcagccccuacgacuuCCUGGCGCAGg -3' miRNA: 3'- gGGCUGCGCgaCUGCG---------------GGACUGCGUC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home