miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26738 5' -60.2 NC_005808.1 + 15139 0.68 0.296773
Target:  5'- gCgCGGCGCGCUGGCauaccagcgccaggGCCUgcggccgccgGGCGCGGu -3'
miRNA:   3'- -GgGCUGCGCGACUG--------------CGGGa---------CUGCGUC- -5'
26738 5' -60.2 NC_005808.1 + 15527 0.71 0.20481
Target:  5'- uUCGACcagcagGgGCUGACGCCCUGA-GCAu -3'
miRNA:   3'- gGGCUG------CgCGACUGCGGGACUgCGUc -5'
26738 5' -60.2 NC_005808.1 + 16114 0.68 0.321385
Target:  5'- aCCGGCuGCaCgucgGugGCCCcGACGUAGg -3'
miRNA:   3'- gGGCUG-CGcGa---CugCGGGaCUGCGUC- -5'
26738 5' -60.2 NC_005808.1 + 16543 0.66 0.396054
Target:  5'- gCCGA-GCGCaUGgagcGCGCCCgccGCGCGGg -3'
miRNA:   3'- gGGCUgCGCG-AC----UGCGGGac-UGCGUC- -5'
26738 5' -60.2 NC_005808.1 + 17281 0.66 0.396054
Target:  5'- uCCCGGCGaCGa--GCGCCg-GugGCAGg -3'
miRNA:   3'- -GGGCUGC-GCgacUGCGGgaCugCGUC- -5'
26738 5' -60.2 NC_005808.1 + 17518 0.7 0.232955
Target:  5'- gCCgGGCGCGCUG-CGCUggGugGCGa -3'
miRNA:   3'- -GGgCUGCGCGACuGCGGgaCugCGUc -5'
26738 5' -60.2 NC_005808.1 + 18094 0.69 0.264286
Target:  5'- gCCGGCGCGaaccagGACGCCUUcGCGCc- -3'
miRNA:   3'- gGGCUGCGCga----CUGCGGGAcUGCGuc -5'
26738 5' -60.2 NC_005808.1 + 18094 0.66 0.436409
Target:  5'- aUCGGCGUG--GGCGCcagccccuacgacuuCCUGGCGCAGg -3'
miRNA:   3'- gGGCUGCGCgaCUGCG---------------GGACUGCGUC- -5'
26738 5' -60.2 NC_005808.1 + 20735 0.67 0.369955
Target:  5'- gCCGACauGCuGCUGGCGCCgUagaGGCGCu- -3'
miRNA:   3'- gGGCUG--CG-CGACUGCGGgA---CUGCGuc -5'
26738 5' -60.2 NC_005808.1 + 21148 0.66 0.4141
Target:  5'- gCCGcCGUGUccGCGCCCUGguucaacaGCGCGGc -3'
miRNA:   3'- gGGCuGCGCGacUGCGGGAC--------UGCGUC- -5'
26738 5' -60.2 NC_005808.1 + 21777 0.71 0.184459
Target:  5'- gCCCGGCacgGUGCUGAUGUCCUGGuucuugGCGGa -3'
miRNA:   3'- -GGGCUG---CGCGACUGCGGGACUg-----CGUC- -5'
26738 5' -60.2 NC_005808.1 + 22884 0.67 0.337029
Target:  5'- -gCGAUGCGC-GGCGCCUcuAUGCAGc -3'
miRNA:   3'- ggGCUGCGCGaCUGCGGGacUGCGUC- -5'
26738 5' -60.2 NC_005808.1 + 23095 0.7 0.221325
Target:  5'- cCCCGACGCcaacgGC-GGCGCCCacGGCGaCAGc -3'
miRNA:   3'- -GGGCUGCG-----CGaCUGCGGGa-CUGC-GUC- -5'
26738 5' -60.2 NC_005808.1 + 24320 0.72 0.161547
Target:  5'- aCCGGCcCGCUGACGgCCggcaaguucucGGCGCAGg -3'
miRNA:   3'- gGGCUGcGCGACUGCgGGa----------CUGCGUC- -5'
26738 5' -60.2 NC_005808.1 + 24498 0.68 0.30629
Target:  5'- -aCGGCGCGaaGGCGUCCUGGuuCGCGc -3'
miRNA:   3'- ggGCUGCGCgaCUGCGGGACU--GCGUc -5'
26738 5' -60.2 NC_005808.1 + 27438 0.72 0.179658
Target:  5'- gCCCGGCG-GCcGcAgGCCCUGGCGCuGg -3'
miRNA:   3'- -GGGCUGCgCGaC-UgCGGGACUGCGuC- -5'
26738 5' -60.2 NC_005808.1 + 28315 0.67 0.38112
Target:  5'- aCUCGGCGCGCUcGGCgucggacucgaugGCCUUGgccucgucgggcagcGCGCGGa -3'
miRNA:   3'- -GGGCUGCGCGA-CUG-------------CGGGAC---------------UGCGUC- -5'
26738 5' -60.2 NC_005808.1 + 29309 0.71 0.199546
Target:  5'- cCCCGGCGCGCUGcaaucgGCGCUgaaaGACGCc- -3'
miRNA:   3'- -GGGCUGCGCGAC------UGCGGga--CUGCGuc -5'
26738 5' -60.2 NC_005808.1 + 29987 0.66 0.387223
Target:  5'- gCCGAgCGCGUcGGCGCCau-GCGCAa -3'
miRNA:   3'- gGGCU-GCGCGaCUGCGGgacUGCGUc -5'
26738 5' -60.2 NC_005808.1 + 30088 0.77 0.07275
Target:  5'- cCUCGACGCGCUGuucaugaaaaACGCCaCUGuGCGCGGc -3'
miRNA:   3'- -GGGCUGCGCGAC----------UGCGG-GAC-UGCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.