Results 1 - 20 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26738 | 5' | -60.2 | NC_005808.1 | + | 2576 | 0.66 | 0.405014 |
Target: 5'- gCCCaGCGCGUgcgcgcgcuUGcCGCCCUGuuGCAa -3' miRNA: 3'- -GGGcUGCGCG---------ACuGCGGGACugCGUc -5' |
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26738 | 5' | -60.2 | NC_005808.1 | + | 3703 | 0.66 | 0.423311 |
Target: 5'- -gCGACGCGCUG-C-CCCaugcGGCGCAu -3' miRNA: 3'- ggGCUGCGCGACuGcGGGa---CUGCGUc -5' |
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26738 | 5' | -60.2 | NC_005808.1 | + | 4498 | 0.68 | 0.313769 |
Target: 5'- gCCgGAUGCGCgcGGCGCCaCaGGCGCu- -3' miRNA: 3'- -GGgCUGCGCGa-CUGCGG-GaCUGCGuc -5' |
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26738 | 5' | -60.2 | NC_005808.1 | + | 5113 | 0.68 | 0.311511 |
Target: 5'- gUCCGGUGCgGCUGGCGCCgUUGaacugcaacgugccGCGCAGg -3' miRNA: 3'- -GGGCUGCG-CGACUGCGG-GAC--------------UGCGUC- -5' |
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26738 | 5' | -60.2 | NC_005808.1 | + | 7173 | 1.09 | 0.000285 |
Target: 5'- gCCCGACGCGCUGACGCCCUGACGCAGc -3' miRNA: 3'- -GGGCUGCGCGACUGCGGGACUGCGUC- -5' |
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26738 | 5' | -60.2 | NC_005808.1 | + | 8168 | 0.67 | 0.345057 |
Target: 5'- uCCCuGCGCGU--GCGCCCgGAUGCu- -3' miRNA: 3'- -GGGcUGCGCGacUGCGGGaCUGCGuc -5' |
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26738 | 5' | -60.2 | NC_005808.1 | + | 8174 | 0.66 | 0.423311 |
Target: 5'- gCCCaGGaagGCGCUGGCGUCCUGcccguuCGuCAGc -3' miRNA: 3'- -GGG-CUg--CGCGACUGCGGGACu-----GC-GUC- -5' |
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26738 | 5' | -60.2 | NC_005808.1 | + | 9653 | 0.68 | 0.32447 |
Target: 5'- aUCGACGCaGCcgUGGuCGCCCUGGCcgaacagccagccguGCAGg -3' miRNA: 3'- gGGCUGCG-CG--ACU-GCGGGACUG---------------CGUC- -5' |
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26738 | 5' | -60.2 | NC_005808.1 | + | 9874 | 0.72 | 0.165915 |
Target: 5'- aCCGGCGCGCUGcuucuCGgCCaGGCGCGu -3' miRNA: 3'- gGGCUGCGCGACu----GCgGGaCUGCGUc -5' |
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26738 | 5' | -60.2 | NC_005808.1 | + | 9981 | 0.71 | 0.20481 |
Target: 5'- aCCgCGGCGuCGC-GGC-CCUUGACGCGGg -3' miRNA: 3'- -GG-GCUGC-GCGaCUGcGGGACUGCGUC- -5' |
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26738 | 5' | -60.2 | NC_005808.1 | + | 10380 | 0.66 | 0.432643 |
Target: 5'- gUCGAUGuCGCcGAUGUCCgggUGAUGCAGc -3' miRNA: 3'- gGGCUGC-GCGaCUGCGGG---ACUGCGUC- -5' |
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26738 | 5' | -60.2 | NC_005808.1 | + | 12199 | 0.7 | 0.238962 |
Target: 5'- aCCGGCccGCGCUGcCuGCCCcuggucggGACGCAGc -3' miRNA: 3'- gGGCUG--CGCGACuG-CGGGa-------CUGCGUC- -5' |
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26738 | 5' | -60.2 | NC_005808.1 | + | 12435 | 0.72 | 0.170387 |
Target: 5'- aCUGGCGCcaacugccGCUGAUGUCC-GACGCGGu -3' miRNA: 3'- gGGCUGCG--------CGACUGCGGGaCUGCGUC- -5' |
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26738 | 5' | -60.2 | NC_005808.1 | + | 12621 | 0.66 | 0.404112 |
Target: 5'- gCCGACGCGCucggcaucgcugcUGcCGUCCuuUGGCGuCGGg -3' miRNA: 3'- gGGCUGCGCG-------------ACuGCGGG--ACUGC-GUC- -5' |
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26738 | 5' | -60.2 | NC_005808.1 | + | 12726 | 0.69 | 0.257757 |
Target: 5'- gCCCGGCccguugGUGCUGggugccGCGCCCaGACGCu- -3' miRNA: 3'- -GGGCUG------CGCGAC------UGCGGGaCUGCGuc -5' |
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26738 | 5' | -60.2 | NC_005808.1 | + | 12826 | 0.66 | 0.4141 |
Target: 5'- gCCGAaaucuCGCGC--ACGCgCCUGGCaGCAGc -3' miRNA: 3'- gGGCU-----GCGCGacUGCG-GGACUG-CGUC- -5' |
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26738 | 5' | -60.2 | NC_005808.1 | + | 13015 | 0.71 | 0.194401 |
Target: 5'- aCCG-CGCGCcugGGCGCggccgaCCUGACGCGa -3' miRNA: 3'- gGGCuGCGCGa--CUGCG------GGACUGCGUc -5' |
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26738 | 5' | -60.2 | NC_005808.1 | + | 13176 | 0.68 | 0.306291 |
Target: 5'- gUCGGcCGCGCUgGGCGCCCUuGGC-CGGc -3' miRNA: 3'- gGGCU-GCGCGA-CUGCGGGA-CUGcGUC- -5' |
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26738 | 5' | -60.2 | NC_005808.1 | + | 14328 | 0.67 | 0.337029 |
Target: 5'- uCCCaGCGCGCggucaugGuGCGCaacauggugagCCUGGCGCAGu -3' miRNA: 3'- -GGGcUGCGCGa------C-UGCG-----------GGACUGCGUC- -5' |
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26738 | 5' | -60.2 | NC_005808.1 | + | 14707 | 0.67 | 0.352398 |
Target: 5'- uCCgCGACGUGCUGggcgagcACGCCaagaUGgcgaGCGCGGa -3' miRNA: 3'- -GG-GCUGCGCGAC-------UGCGGg---AC----UGCGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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