miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26738 5' -60.2 NC_005808.1 + 42198 0.69 0.263627
Target:  5'- aCCGcCGUGCUGcugguggGCGCCCUGG-GCAu -3'
miRNA:   3'- gGGCuGCGCGAC-------UGCGGGACUgCGUc -5'
26738 5' -60.2 NC_005808.1 + 42190 0.68 0.329139
Target:  5'- cCCgCGACGUGCUGcucaacagucGCGCgCUGGcCGCGc -3'
miRNA:   3'- -GG-GCUGCGCGAC----------UGCGgGACU-GCGUc -5'
26738 5' -60.2 NC_005808.1 + 39755 0.66 0.4141
Target:  5'- cCUCGcugGUGCUGGCGCCgCUG-CGCGu -3'
miRNA:   3'- -GGGCug-CGCGACUGCGG-GACuGCGUc -5'
26738 5' -60.2 NC_005808.1 + 38213 0.71 0.199547
Target:  5'- gCCCGGCGCGaC-GGCGCCUggcuGCGCAu -3'
miRNA:   3'- -GGGCUGCGC-GaCUGCGGGac--UGCGUc -5'
26738 5' -60.2 NC_005808.1 + 38152 0.68 0.298222
Target:  5'- -aUGACGgugccacCGCUGGCGgcuuccCCCUGGCGCGGc -3'
miRNA:   3'- ggGCUGC-------GCGACUGC------GGGACUGCGUC- -5'
26738 5' -60.2 NC_005808.1 + 38085 0.66 0.423311
Target:  5'- -gCGAUGCGCUcaaGCGCCUgUGGCGCc- -3'
miRNA:   3'- ggGCUGCGCGAc--UGCGGG-ACUGCGuc -5'
26738 5' -60.2 NC_005808.1 + 37928 0.68 0.321385
Target:  5'- aUCCGGCGCGCUGGUGCCC--GC-CAa -3'
miRNA:   3'- -GGGCUGCGCGACUGCGGGacUGcGUc -5'
26738 5' -60.2 NC_005808.1 + 37803 0.66 0.432643
Target:  5'- uCCCGcaGCGCcaGCcGGCGUgCUgGGCGCAGu -3'
miRNA:   3'- -GGGC--UGCG--CGaCUGCGgGA-CUGCGUC- -5'
26738 5' -60.2 NC_005808.1 + 37213 0.67 0.378523
Target:  5'- uCgCGGCGCGCaccagUGACauaaCCCUGgGCGCGGu -3'
miRNA:   3'- -GgGCUGCGCG-----ACUGc---GGGAC-UGCGUC- -5'
26738 5' -60.2 NC_005808.1 + 36861 0.69 0.257757
Target:  5'- gCCCGGCGCGCUgGGCGaUCUG-UGCGa -3'
miRNA:   3'- -GGGCUGCGCGA-CUGCgGGACuGCGUc -5'
26738 5' -60.2 NC_005808.1 + 36795 0.68 0.30555
Target:  5'- gCCCGACuauccgcugGCGCUgccgcgauggcggGACacgauggucaagGCCCUGGCGCAc -3'
miRNA:   3'- -GGGCUG---------CGCGA-------------CUG------------CGGGACUGCGUc -5'
26738 5' -60.2 NC_005808.1 + 36364 0.69 0.270948
Target:  5'- aCCGGCGUGC--AgGCCCUGgccgaaggcaaaACGCAGa -3'
miRNA:   3'- gGGCUGCGCGacUgCGGGAC------------UGCGUC- -5'
26738 5' -60.2 NC_005808.1 + 36038 0.7 0.221325
Target:  5'- uCCUcaagGAUGCGCUGACGC-CUGGCGauuCGGg -3'
miRNA:   3'- -GGG----CUGCGCGACUGCGgGACUGC---GUC- -5'
26738 5' -60.2 NC_005808.1 + 36029 0.67 0.369955
Target:  5'- gCCGAgGCGgaUGGCaaGCCCU-ACGCGGg -3'
miRNA:   3'- gGGCUgCGCg-ACUG--CGGGAcUGCGUC- -5'
26738 5' -60.2 NC_005808.1 + 34666 0.69 0.284677
Target:  5'- gCCGugGCGUgaaggugGACGCCgaG-CGCAa -3'
miRNA:   3'- gGGCugCGCGa------CUGCGGgaCuGCGUc -5'
26738 5' -60.2 NC_005808.1 + 34023 0.67 0.378523
Target:  5'- gCCGcACGCGCggccuacGACGCCCaGgaugaggucgaGCGCGGc -3'
miRNA:   3'- gGGC-UGCGCGa------CUGCGGGaC-----------UGCGUC- -5'
26738 5' -60.2 NC_005808.1 + 32098 0.66 0.396054
Target:  5'- -aCGGcCGCGUUGcucaACGCCCUGGcCGCu- -3'
miRNA:   3'- ggGCU-GCGCGAC----UGCGGGACU-GCGuc -5'
26738 5' -60.2 NC_005808.1 + 32046 0.66 0.422384
Target:  5'- aCCCGGCGCGCUcgcacaacuaugcGACGCC---AUGCu- -3'
miRNA:   3'- -GGGCUGCGCGA-------------CUGCGGgacUGCGuc -5'
26738 5' -60.2 NC_005808.1 + 31911 0.71 0.199546
Target:  5'- gCCGuGCGCGCUGcCGUCaaGACGCAc -3'
miRNA:   3'- gGGC-UGCGCGACuGCGGgaCUGCGUc -5'
26738 5' -60.2 NC_005808.1 + 31050 0.68 0.321385
Target:  5'- aCCGGCGgGCaguccuaucagGAUGCCCgcuCGCAGg -3'
miRNA:   3'- gGGCUGCgCGa----------CUGCGGGacuGCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.