miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26738 5' -60.2 NC_005808.1 + 20735 0.67 0.369955
Target:  5'- gCCGACauGCuGCUGGCGCCgUagaGGCGCu- -3'
miRNA:   3'- gGGCUG--CG-CGACUGCGGgA---CUGCGuc -5'
26738 5' -60.2 NC_005808.1 + 14707 0.67 0.352398
Target:  5'- uCCgCGACGUGCUGggcgagcACGCCaagaUGgcgaGCGCGGa -3'
miRNA:   3'- -GG-GCUGCGCGAC-------UGCGGg---AC----UGCGUC- -5'
26738 5' -60.2 NC_005808.1 + 8168 0.67 0.345057
Target:  5'- uCCCuGCGCGU--GCGCCCgGAUGCu- -3'
miRNA:   3'- -GGGcUGCGCGacUGCGGGaCUGCGuc -5'
26738 5' -60.2 NC_005808.1 + 22884 0.67 0.337029
Target:  5'- -gCGAUGCGC-GGCGCCUcuAUGCAGc -3'
miRNA:   3'- ggGCUGCGCGaCUGCGGGacUGCGUC- -5'
26738 5' -60.2 NC_005808.1 + 14328 0.67 0.337029
Target:  5'- uCCCaGCGCGCggucaugGuGCGCaacauggugagCCUGGCGCAGu -3'
miRNA:   3'- -GGGcUGCGCGa------C-UGCG-----------GGACUGCGUC- -5'
26738 5' -60.2 NC_005808.1 + 42190 0.68 0.329139
Target:  5'- cCCgCGACGUGCUGcucaacagucGCGCgCUGGcCGCGc -3'
miRNA:   3'- -GG-GCUGCGCGAC----------UGCGgGACU-GCGUc -5'
26738 5' -60.2 NC_005808.1 + 31007 0.68 0.329139
Target:  5'- gCCCGGCGgccaGCcGGCgGCCCUGG-GCGGc -3'
miRNA:   3'- -GGGCUGCg---CGaCUG-CGGGACUgCGUC- -5'
26738 5' -60.2 NC_005808.1 + 9653 0.68 0.32447
Target:  5'- aUCGACGCaGCcgUGGuCGCCCUGGCcgaacagccagccguGCAGg -3'
miRNA:   3'- gGGCUGCG-CG--ACU-GCGGGACUG---------------CGUC- -5'
26738 5' -60.2 NC_005808.1 + 16114 0.68 0.321385
Target:  5'- aCCGGCuGCaCgucgGugGCCCcGACGUAGg -3'
miRNA:   3'- gGGCUG-CGcGa---CugCGGGaCUGCGUC- -5'
26738 5' -60.2 NC_005808.1 + 37928 0.68 0.321385
Target:  5'- aUCCGGCGCGCUGGUGCCC--GC-CAa -3'
miRNA:   3'- -GGGCUGCGCGACUGCGGGacUGcGUc -5'
26738 5' -60.2 NC_005808.1 + 31050 0.68 0.321385
Target:  5'- aCCGGCGgGCaguccuaucagGAUGCCCgcuCGCAGg -3'
miRNA:   3'- gGGCUGCgCGa----------CUGCGGGacuGCGUC- -5'
26738 5' -60.2 NC_005808.1 + 4498 0.68 0.313769
Target:  5'- gCCgGAUGCGCgcGGCGCCaCaGGCGCu- -3'
miRNA:   3'- -GGgCUGCGCGa-CUGCGG-GaCUGCGuc -5'
26738 5' -60.2 NC_005808.1 + 5113 0.68 0.311511
Target:  5'- gUCCGGUGCgGCUGGCGCCgUUGaacugcaacgugccGCGCAGg -3'
miRNA:   3'- -GGGCUGCG-CGACUGCGG-GAC--------------UGCGUC- -5'
26738 5' -60.2 NC_005808.1 + 13176 0.68 0.306291
Target:  5'- gUCGGcCGCGCUgGGCGCCCUuGGC-CGGc -3'
miRNA:   3'- gGGCU-GCGCGA-CUGCGGGA-CUGcGUC- -5'
26738 5' -60.2 NC_005808.1 + 24498 0.68 0.30629
Target:  5'- -aCGGCGCGaaGGCGUCCUGGuuCGCGc -3'
miRNA:   3'- ggGCUGCGCgaCUGCGGGACU--GCGUc -5'
26738 5' -60.2 NC_005808.1 + 36795 0.68 0.30555
Target:  5'- gCCCGACuauccgcugGCGCUgccgcgauggcggGACacgauggucaagGCCCUGGCGCAc -3'
miRNA:   3'- -GGGCUG---------CGCGA-------------CUG------------CGGGACUGCGUc -5'
26738 5' -60.2 NC_005808.1 + 38152 0.68 0.298222
Target:  5'- -aUGACGgugccacCGCUGGCGgcuuccCCCUGGCGCGGc -3'
miRNA:   3'- ggGCUGC-------GCGACUGC------GGGACUGCGUC- -5'
26738 5' -60.2 NC_005808.1 + 15139 0.68 0.296773
Target:  5'- gCgCGGCGCGCUGGCauaccagcgccaggGCCUgcggccgccgGGCGCGGu -3'
miRNA:   3'- -GgGCUGCGCGACUG--------------CGGGa---------CUGCGUC- -5'
26738 5' -60.2 NC_005808.1 + 34666 0.69 0.284677
Target:  5'- gCCGugGCGUgaaggugGACGCCgaG-CGCAa -3'
miRNA:   3'- gGGCugCGCGa------CUGCGGgaCuGCGUc -5'
26738 5' -60.2 NC_005808.1 + 36364 0.69 0.270948
Target:  5'- aCCGGCGUGC--AgGCCCUGgccgaaggcaaaACGCAGa -3'
miRNA:   3'- gGGCUGCGCGacUgCGGGAC------------UGCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.