Results 41 - 60 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26740 | 3' | -55.8 | NC_005808.1 | + | 17872 | 0.69 | 0.395663 |
Target: 5'- cGCGCAGgcgCGGUGGaaGCGGC-CCGa -3' miRNA: 3'- aCGCGUCa--GUCGCUaaCGUCGuGGCc -5' |
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26740 | 3' | -55.8 | NC_005808.1 | + | 18367 | 0.66 | 0.593332 |
Target: 5'- uUGC-CGG-CGGCGAgguuggccUUGCcgauGGCGCCGGu -3' miRNA: 3'- -ACGcGUCaGUCGCU--------AACG----UCGUGGCC- -5' |
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26740 | 3' | -55.8 | NC_005808.1 | + | 18716 | 0.67 | 0.548999 |
Target: 5'- aGCGCA-UCGGUacg-GCGGCACgGGa -3' miRNA: 3'- aCGCGUcAGUCGcuaaCGUCGUGgCC- -5' |
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26740 | 3' | -55.8 | NC_005808.1 | + | 18822 | 0.66 | 0.604523 |
Target: 5'- gGCGCAGgaagCuGCGAauuUUGCgcGGCauguagaagGCCGGg -3' miRNA: 3'- aCGCGUCa---GuCGCU---AACG--UCG---------UGGCC- -5' |
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26740 | 3' | -55.8 | NC_005808.1 | + | 18838 | 0.7 | 0.377356 |
Target: 5'- gGCGCA-UCGGCccg-GUGGCGCCGGc -3' miRNA: 3'- aCGCGUcAGUCGcuaaCGUCGUGGCC- -5' |
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26740 | 3' | -55.8 | NC_005808.1 | + | 19069 | 0.74 | 0.192768 |
Target: 5'- aGCGUguccucgccgaGGUCAcGCGAUUGCAG-GCCGGc -3' miRNA: 3'- aCGCG-----------UCAGU-CGCUAACGUCgUGGCC- -5' |
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26740 | 3' | -55.8 | NC_005808.1 | + | 19763 | 0.7 | 0.377356 |
Target: 5'- cGCGCuGUCGGCuGUcgGCAGCGCgGc -3' miRNA: 3'- aCGCGuCAGUCGcUAa-CGUCGUGgCc -5' |
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26740 | 3' | -55.8 | NC_005808.1 | + | 20423 | 0.68 | 0.452868 |
Target: 5'- cGCGCAGauggugcgcgaauUCGGCaagGAcaagUGCAGCACCa- -3' miRNA: 3'- aCGCGUC-------------AGUCG---CUa---ACGUCGUGGcc -5' |
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26740 | 3' | -55.8 | NC_005808.1 | + | 21834 | 0.67 | 0.527209 |
Target: 5'- cGCGCgaugAGUCgAGCGcggcGCAGCGCCu- -3' miRNA: 3'- aCGCG----UCAG-UCGCuaa-CGUCGUGGcc -5' |
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26740 | 3' | -55.8 | NC_005808.1 | + | 23745 | 0.72 | 0.279927 |
Target: 5'- cGCGCAG-CAGCGccAUgccgGCGcCACCGGg -3' miRNA: 3'- aCGCGUCaGUCGC--UAa---CGUcGUGGCC- -5' |
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26740 | 3' | -55.8 | NC_005808.1 | + | 24304 | 0.67 | 0.516434 |
Target: 5'- gGCGgugaGGUCGGCGA--GCAGC-CgCGGg -3' miRNA: 3'- aCGCg---UCAGUCGCUaaCGUCGuG-GCC- -5' |
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26740 | 3' | -55.8 | NC_005808.1 | + | 24555 | 0.73 | 0.226796 |
Target: 5'- cGCGCAGcgCGGCGAUgGCGagGCCGGc -3' miRNA: 3'- aCGCGUCa-GUCGCUAaCGUcgUGGCC- -5' |
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26740 | 3' | -55.8 | NC_005808.1 | + | 25797 | 0.66 | 0.604523 |
Target: 5'- cGCGCGGcgcgcUCGGUaucGUUGaucuGCACCGGg -3' miRNA: 3'- aCGCGUC-----AGUCGc--UAACgu--CGUGGCC- -5' |
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26740 | 3' | -55.8 | NC_005808.1 | + | 27674 | 0.68 | 0.474294 |
Target: 5'- cGCGCAGUCGGCacUUG-AG-GCCGGc -3' miRNA: 3'- aCGCGUCAGUCGcuAACgUCgUGGCC- -5' |
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26740 | 3' | -55.8 | NC_005808.1 | + | 27744 | 0.7 | 0.368419 |
Target: 5'- gGCGCc--CAGCG--UGCGGCGCUGGc -3' miRNA: 3'- aCGCGucaGUCGCuaACGUCGUGGCC- -5' |
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26740 | 3' | -55.8 | NC_005808.1 | + | 27890 | 0.66 | 0.593332 |
Target: 5'- gGCGCAGggcauggaGGCGcaacUGCAG-GCCGGg -3' miRNA: 3'- aCGCGUCag------UCGCua--ACGUCgUGGCC- -5' |
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26740 | 3' | -55.8 | NC_005808.1 | + | 28576 | 0.67 | 0.527209 |
Target: 5'- cGCGCAcGUCGGCcaccgGCAGCGuggugUCGGu -3' miRNA: 3'- aCGCGU-CAGUCGcuaa-CGUCGU-----GGCC- -5' |
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26740 | 3' | -55.8 | NC_005808.1 | + | 29600 | 0.74 | 0.220791 |
Target: 5'- cGCGCGGUUuGCcaGUUGUccAGCGCCGGg -3' miRNA: 3'- aCGCGUCAGuCGc-UAACG--UCGUGGCC- -5' |
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26740 | 3' | -55.8 | NC_005808.1 | + | 30179 | 0.7 | 0.34249 |
Target: 5'- gGCGcCAGUCGGUGAagGCcaugaaguAGCcGCCGGg -3' miRNA: 3'- aCGC-GUCAGUCGCUaaCG--------UCG-UGGCC- -5' |
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26740 | 3' | -55.8 | NC_005808.1 | + | 30436 | 0.68 | 0.499384 |
Target: 5'- aGCGCGGgCAGgGccucgcccugaaucaGUUGCcagggGGCGCCGGu -3' miRNA: 3'- aCGCGUCaGUCgC---------------UAACG-----UCGUGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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