Results 41 - 60 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26740 | 3' | -55.8 | NC_005808.1 | + | 31165 | 0.68 | 0.484673 |
Target: 5'- cGCGCcuuaUCGGCGAccUGCA-CGCCGGc -3' miRNA: 3'- aCGCGuc--AGUCGCUa-ACGUcGUGGCC- -5' |
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26740 | 3' | -55.8 | NC_005808.1 | + | 3562 | 0.68 | 0.49516 |
Target: 5'- aGCGCAG-CAGCGGgcuggGCGuaCACCGa -3' miRNA: 3'- aCGCGUCaGUCGCUaa---CGUc-GUGGCc -5' |
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26740 | 3' | -55.8 | NC_005808.1 | + | 30436 | 0.68 | 0.499384 |
Target: 5'- aGCGCGGgCAGgGccucgcccugaaucaGUUGCcagggGGCGCCGGu -3' miRNA: 3'- aCGCGUCaGUCgC---------------UAACG-----UCGUGGCC- -5' |
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26740 | 3' | -55.8 | NC_005808.1 | + | 11744 | 0.67 | 0.505749 |
Target: 5'- uUGUGCGaacugaUCGGCGAcaggUUGCAGCggauuuGCCGGc -3' miRNA: 3'- -ACGCGUc-----AGUCGCU----AACGUCG------UGGCC- -5' |
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26740 | 3' | -55.8 | NC_005808.1 | + | 5242 | 0.67 | 0.505749 |
Target: 5'- cGCGCAGuUCGGCcg--GCAGguCgGGg -3' miRNA: 3'- aCGCGUC-AGUCGcuaaCGUCguGgCC- -5' |
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26740 | 3' | -55.8 | NC_005808.1 | + | 455 | 0.67 | 0.505749 |
Target: 5'- cUGCGCGGcCAGC--UUGCgGGCGCUGu -3' miRNA: 3'- -ACGCGUCaGUCGcuAACG-UCGUGGCc -5' |
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26740 | 3' | -55.8 | NC_005808.1 | + | 5012 | 0.67 | 0.505749 |
Target: 5'- gGCGCAGUCcGCu-UU-CAGCGCCGc -3' miRNA: 3'- aCGCGUCAGuCGcuAAcGUCGUGGCc -5' |
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26740 | 3' | -55.8 | NC_005808.1 | + | 24304 | 0.67 | 0.516434 |
Target: 5'- gGCGgugaGGUCGGCGA--GCAGC-CgCGGg -3' miRNA: 3'- aCGCg---UCAGUCGCUaaCGUCGuG-GCC- -5' |
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26740 | 3' | -55.8 | NC_005808.1 | + | 21834 | 0.67 | 0.527209 |
Target: 5'- cGCGCgaugAGUCgAGCGcggcGCAGCGCCu- -3' miRNA: 3'- aCGCG----UCAG-UCGCuaa-CGUCGUGGcc -5' |
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26740 | 3' | -55.8 | NC_005808.1 | + | 38730 | 0.67 | 0.527209 |
Target: 5'- aGCGCGGccuaCAGCGA---CGGCGCCuGGu -3' miRNA: 3'- aCGCGUCa---GUCGCUaacGUCGUGG-CC- -5' |
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26740 | 3' | -55.8 | NC_005808.1 | + | 28576 | 0.67 | 0.527209 |
Target: 5'- cGCGCAcGUCGGCcaccgGCAGCGuggugUCGGu -3' miRNA: 3'- aCGCGU-CAGUCGcuaa-CGUCGU-----GGCC- -5' |
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26740 | 3' | -55.8 | NC_005808.1 | + | 11065 | 0.67 | 0.536977 |
Target: 5'- gGCGCuGUuuccacggcaacaCAGCGAggcccaGCAGCacGCCGGc -3' miRNA: 3'- aCGCGuCA-------------GUCGCUaa----CGUCG--UGGCC- -5' |
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26740 | 3' | -55.8 | NC_005808.1 | + | 31450 | 0.67 | 0.548999 |
Target: 5'- gUGCGCAGgCGGCcca-GCAGCagGCCGa -3' miRNA: 3'- -ACGCGUCaGUCGcuaaCGUCG--UGGCc -5' |
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26740 | 3' | -55.8 | NC_005808.1 | + | 18716 | 0.67 | 0.548999 |
Target: 5'- aGCGCA-UCGGUacg-GCGGCACgGGa -3' miRNA: 3'- aCGCGUcAGUCGcuaaCGUCGUGgCC- -5' |
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26740 | 3' | -55.8 | NC_005808.1 | + | 13904 | 0.67 | 0.56 |
Target: 5'- gGCGUcggGGUUguuccaguucagGGCGAUgucgcGCAGCGCCGu -3' miRNA: 3'- aCGCG---UCAG------------UCGCUAa----CGUCGUGGCc -5' |
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26740 | 3' | -55.8 | NC_005808.1 | + | 6176 | 0.67 | 0.565524 |
Target: 5'- aGCGCAGgccggucuugccgCAGCGuUUGCaggugacGGCGCgCGGc -3' miRNA: 3'- aCGCGUCa------------GUCGCuAACG-------UCGUG-GCC- -5' |
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26740 | 3' | -55.8 | NC_005808.1 | + | 11250 | 0.66 | 0.571062 |
Target: 5'- aGCGU----GGCGAUgaggguuugcgcUGCGGCGCUGGg -3' miRNA: 3'- aCGCGucagUCGCUA------------ACGUCGUGGCC- -5' |
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26740 | 3' | -55.8 | NC_005808.1 | + | 307 | 0.66 | 0.582175 |
Target: 5'- cGCGCucuuccGUcCAGgGcgUGCcGUACCGGg -3' miRNA: 3'- aCGCGu-----CA-GUCgCuaACGuCGUGGCC- -5' |
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26740 | 3' | -55.8 | NC_005808.1 | + | 8656 | 0.66 | 0.593332 |
Target: 5'- cGCGCcGUacucgcugugugCAGCGGcUGCuGCGCCGc -3' miRNA: 3'- aCGCGuCA------------GUCGCUaACGuCGUGGCc -5' |
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26740 | 3' | -55.8 | NC_005808.1 | + | 18367 | 0.66 | 0.593332 |
Target: 5'- uUGC-CGG-CGGCGAgguuggccUUGCcgauGGCGCCGGu -3' miRNA: 3'- -ACGcGUCaGUCGCU--------AACG----UCGUGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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