Results 41 - 60 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26740 | 3' | -55.8 | NC_005808.1 | + | 31165 | 0.68 | 0.484673 |
Target: 5'- cGCGCcuuaUCGGCGAccUGCA-CGCCGGc -3' miRNA: 3'- aCGCGuc--AGUCGCUa-ACGUcGUGGCC- -5' |
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26740 | 3' | -55.8 | NC_005808.1 | + | 5012 | 0.67 | 0.505749 |
Target: 5'- gGCGCAGUCcGCu-UU-CAGCGCCGc -3' miRNA: 3'- aCGCGUCAGuCGcuAAcGUCGUGGCc -5' |
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26740 | 3' | -55.8 | NC_005808.1 | + | 5242 | 0.67 | 0.505749 |
Target: 5'- cGCGCAGuUCGGCcg--GCAGguCgGGg -3' miRNA: 3'- aCGCGUC-AGUCGcuaaCGUCguGgCC- -5' |
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26740 | 3' | -55.8 | NC_005808.1 | + | 38730 | 0.67 | 0.527209 |
Target: 5'- aGCGCGGccuaCAGCGA---CGGCGCCuGGu -3' miRNA: 3'- aCGCGUCa---GUCGCUaacGUCGUGG-CC- -5' |
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26740 | 3' | -55.8 | NC_005808.1 | + | 21834 | 0.67 | 0.527209 |
Target: 5'- cGCGCgaugAGUCgAGCGcggcGCAGCGCCu- -3' miRNA: 3'- aCGCG----UCAG-UCGCuaa-CGUCGUGGcc -5' |
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26740 | 3' | -55.8 | NC_005808.1 | + | 11065 | 0.67 | 0.536977 |
Target: 5'- gGCGCuGUuuccacggcaacaCAGCGAggcccaGCAGCacGCCGGc -3' miRNA: 3'- aCGCGuCA-------------GUCGCUaa----CGUCG--UGGCC- -5' |
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26740 | 3' | -55.8 | NC_005808.1 | + | 31450 | 0.67 | 0.548999 |
Target: 5'- gUGCGCAGgCGGCcca-GCAGCagGCCGa -3' miRNA: 3'- -ACGCGUCaGUCGcuaaCGUCG--UGGCc -5' |
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26740 | 3' | -55.8 | NC_005808.1 | + | 7599 | 0.68 | 0.443848 |
Target: 5'- gGCGaCGGUggaCAGCacguGGUcgcGCAGCGCCGGa -3' miRNA: 3'- aCGC-GUCA---GUCG----CUAa--CGUCGUGGCC- -5' |
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26740 | 3' | -55.8 | NC_005808.1 | + | 10892 | 0.69 | 0.433946 |
Target: 5'- cGCGCggcgggcuGGUCAgGCGGUgcUGCAGCaguuACUGGu -3' miRNA: 3'- aCGCG--------UCAGU-CGCUA--ACGUCG----UGGCC- -5' |
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26740 | 3' | -55.8 | NC_005808.1 | + | 4381 | 0.7 | 0.368419 |
Target: 5'- aUGCGCAGcCAgGCGcc-GUcGCGCCGGg -3' miRNA: 3'- -ACGCGUCaGU-CGCuaaCGuCGUGGCC- -5' |
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26740 | 3' | -55.8 | NC_005808.1 | + | 27744 | 0.7 | 0.368419 |
Target: 5'- gGCGCc--CAGCG--UGCGGCGCUGGc -3' miRNA: 3'- aCGCGucaGUCGCuaACGUCGUGGCC- -5' |
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26740 | 3' | -55.8 | NC_005808.1 | + | 18838 | 0.7 | 0.377356 |
Target: 5'- gGCGCA-UCGGCccg-GUGGCGCCGGc -3' miRNA: 3'- aCGCGUcAGUCGcuaaCGUCGUGGCC- -5' |
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26740 | 3' | -55.8 | NC_005808.1 | + | 19763 | 0.7 | 0.377356 |
Target: 5'- cGCGCuGUCGGCuGUcgGCAGCGCgGc -3' miRNA: 3'- aCGCGuCAGUCGcUAa-CGUCGUGgCc -5' |
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26740 | 3' | -55.8 | NC_005808.1 | + | 13728 | 0.7 | 0.386438 |
Target: 5'- cGC-CAG-CAGCGAggacguggcGCGGCGCUGGg -3' miRNA: 3'- aCGcGUCaGUCGCUaa-------CGUCGUGGCC- -5' |
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26740 | 3' | -55.8 | NC_005808.1 | + | 17872 | 0.69 | 0.395663 |
Target: 5'- cGCGCAGgcgCGGUGGaaGCGGC-CCGa -3' miRNA: 3'- aCGCGUCa--GUCGCUaaCGUCGuGGCc -5' |
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26740 | 3' | -55.8 | NC_005808.1 | + | 15475 | 0.69 | 0.404086 |
Target: 5'- cGCGCGgcGUCAGCu-UUGCaggcuaaGGCACUGGu -3' miRNA: 3'- aCGCGU--CAGUCGcuAACG-------UCGUGGCC- -5' |
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26740 | 3' | -55.8 | NC_005808.1 | + | 2128 | 0.69 | 0.414533 |
Target: 5'- uUGCGCcGUUGGCGAgUUGCAGgCACUu- -3' miRNA: 3'- -ACGCGuCAGUCGCU-AACGUC-GUGGcc -5' |
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26740 | 3' | -55.8 | NC_005808.1 | + | 2842 | 0.69 | 0.414533 |
Target: 5'- cGCGCAG-CGGCGc---CAGCACCa- -3' miRNA: 3'- aCGCGUCaGUCGCuaacGUCGUGGcc -5' |
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26740 | 3' | -55.8 | NC_005808.1 | + | 8993 | 0.69 | 0.424173 |
Target: 5'- cGUGCcGcCAGCGGUgGCcGUGCCGGa -3' miRNA: 3'- aCGCGuCaGUCGCUAaCGuCGUGGCC- -5' |
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26740 | 3' | -55.8 | NC_005808.1 | + | 393 | 0.69 | 0.432963 |
Target: 5'- aGCGCGGcCAGCGcgcgacuGUUgaGCAGCACgucgCGGg -3' miRNA: 3'- aCGCGUCaGUCGC-------UAA--CGUCGUG----GCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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