miRNA display CGI


Results 41 - 60 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26740 3' -55.8 NC_005808.1 + 2128 0.69 0.414533
Target:  5'- uUGCGCcGUUGGCGAgUUGCAGgCACUu- -3'
miRNA:   3'- -ACGCGuCAGUCGCU-AACGUC-GUGGcc -5'
26740 3' -55.8 NC_005808.1 + 2842 0.69 0.414533
Target:  5'- cGCGCAG-CGGCGc---CAGCACCa- -3'
miRNA:   3'- aCGCGUCaGUCGCuaacGUCGUGGcc -5'
26740 3' -55.8 NC_005808.1 + 15475 0.69 0.404086
Target:  5'- cGCGCGgcGUCAGCu-UUGCaggcuaaGGCACUGGu -3'
miRNA:   3'- aCGCGU--CAGUCGcuAACG-------UCGUGGCC- -5'
26740 3' -55.8 NC_005808.1 + 39051 0.69 0.403144
Target:  5'- gGCGCGGUUGGCGGgacugcgcggugUGCGGCugUa- -3'
miRNA:   3'- aCGCGUCAGUCGCUa-----------ACGUCGugGcc -5'
26740 3' -55.8 NC_005808.1 + 13394 0.69 0.395663
Target:  5'- cGCGCGGUUguaGGCGGcaucgUUGCGGUAaCGGu -3'
miRNA:   3'- aCGCGUCAG---UCGCU-----AACGUCGUgGCC- -5'
26740 3' -55.8 NC_005808.1 + 17872 0.69 0.395663
Target:  5'- cGCGCAGgcgCGGUGGaaGCGGC-CCGa -3'
miRNA:   3'- aCGCGUCa--GUCGCUaaCGUCGuGGCc -5'
26740 3' -55.8 NC_005808.1 + 1348 0.7 0.386438
Target:  5'- aGcCGUGGUCGGCGGccUUGC-GCAuCCGGc -3'
miRNA:   3'- aC-GCGUCAGUCGCU--AACGuCGU-GGCC- -5'
26740 3' -55.8 NC_005808.1 + 13728 0.7 0.386438
Target:  5'- cGC-CAG-CAGCGAggacguggcGCGGCGCUGGg -3'
miRNA:   3'- aCGcGUCaGUCGCUaa-------CGUCGUGGCC- -5'
26740 3' -55.8 NC_005808.1 + 19763 0.7 0.377356
Target:  5'- cGCGCuGUCGGCuGUcgGCAGCGCgGc -3'
miRNA:   3'- aCGCGuCAGUCGcUAa-CGUCGUGgCc -5'
26740 3' -55.8 NC_005808.1 + 9324 0.7 0.377356
Target:  5'- gGCGCAcGUCGGCGcg-GCgGGCGgCGGc -3'
miRNA:   3'- aCGCGU-CAGUCGCuaaCG-UCGUgGCC- -5'
26740 3' -55.8 NC_005808.1 + 18838 0.7 0.377356
Target:  5'- gGCGCA-UCGGCccg-GUGGCGCCGGc -3'
miRNA:   3'- aCGCGUcAGUCGcuaaCGUCGUGGCC- -5'
26740 3' -55.8 NC_005808.1 + 27744 0.7 0.368419
Target:  5'- gGCGCc--CAGCG--UGCGGCGCUGGc -3'
miRNA:   3'- aCGCGucaGUCGCuaACGUCGUGGCC- -5'
26740 3' -55.8 NC_005808.1 + 4381 0.7 0.368419
Target:  5'- aUGCGCAGcCAgGCGcc-GUcGCGCCGGg -3'
miRNA:   3'- -ACGCGUCaGU-CGCuaaCGuCGUGGCC- -5'
26740 3' -55.8 NC_005808.1 + 8686 0.7 0.359628
Target:  5'- cGCGCAccUCGGCG-UUGguGUACUGGc -3'
miRNA:   3'- aCGCGUc-AGUCGCuAACguCGUGGCC- -5'
26740 3' -55.8 NC_005808.1 + 9040 0.7 0.350985
Target:  5'- cGCGaUAGcCAGCGGUgGCcGUGCCGGa -3'
miRNA:   3'- aCGC-GUCaGUCGCUAaCGuCGUGGCC- -5'
26740 3' -55.8 NC_005808.1 + 30179 0.7 0.34249
Target:  5'- gGCGcCAGUCGGUGAagGCcaugaaguAGCcGCCGGg -3'
miRNA:   3'- aCGC-GUCAGUCGCUaaCG--------UCG-UGGCC- -5'
26740 3' -55.8 NC_005808.1 + 33153 0.71 0.310009
Target:  5'- gUGCGCgaAGUgGGCGAUggUGgAGUugCGGa -3'
miRNA:   3'- -ACGCG--UCAgUCGCUA--ACgUCGugGCC- -5'
26740 3' -55.8 NC_005808.1 + 23745 0.72 0.279927
Target:  5'- cGCGCAG-CAGCGccAUgccgGCGcCACCGGg -3'
miRNA:   3'- aCGCGUCaGUCGC--UAa---CGUcGUGGCC- -5'
26740 3' -55.8 NC_005808.1 + 13280 0.73 0.252212
Target:  5'- gGCGUcuuUCAGCgccGAUUGCAGCgcGCCGGg -3'
miRNA:   3'- aCGCGuc-AGUCG---CUAACGUCG--UGGCC- -5'
26740 3' -55.8 NC_005808.1 + 39846 0.73 0.252212
Target:  5'- gGCaGUGGUCGGCacgcccgaGCAGCGCCGGg -3'
miRNA:   3'- aCG-CGUCAGUCGcuaa----CGUCGUGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.