miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26740 5' -64.2 NC_005808.1 + 7784 1.08 0.000138
Target:  5'- gCGCCGGCGUCCACCCUUCGCCGCCCAg -3'
miRNA:   3'- -GCGGCCGCAGGUGGGAAGCGGCGGGU- -5'
26740 5' -64.2 NC_005808.1 + 32330 0.78 0.032145
Target:  5'- gGCCGGCGUCCcgaCaacCGCCGCCCAg -3'
miRNA:   3'- gCGGCCGCAGGug-GgaaGCGGCGGGU- -5'
26740 5' -64.2 NC_005808.1 + 29638 0.73 0.072235
Target:  5'- uGCCGGUGUCCAUUCgcgCGaacaucCCGCCCGa -3'
miRNA:   3'- gCGGCCGCAGGUGGGaa-GC------GGCGGGU- -5'
26740 5' -64.2 NC_005808.1 + 34702 0.73 0.078455
Target:  5'- aGCUGGCGaUCUACgCacgCGCCGCCCu -3'
miRNA:   3'- gCGGCCGC-AGGUGgGaa-GCGGCGGGu -5'
26740 5' -64.2 NC_005808.1 + 7929 0.72 0.092465
Target:  5'- gCGCuCGGCGUCCACCUUcaCGCCacgGCCa- -3'
miRNA:   3'- -GCG-GCCGCAGGUGGGAa-GCGG---CGGgu -5'
26740 5' -64.2 NC_005808.1 + 1503 0.72 0.097642
Target:  5'- uGCUGGuCGgacauggcgCC-CCCUuauUCGCCGCCCAg -3'
miRNA:   3'- gCGGCC-GCa--------GGuGGGA---AGCGGCGGGU- -5'
26740 5' -64.2 NC_005808.1 + 693 0.71 0.100332
Target:  5'- gCGCCGGCcgggCCGCCCaagauaCCGCCCAg -3'
miRNA:   3'- -GCGGCCGca--GGUGGGaagc--GGCGGGU- -5'
26740 5' -64.2 NC_005808.1 + 41921 0.71 0.103091
Target:  5'- gGCCGGCG-CCGCCgUagGCgGCCUg -3'
miRNA:   3'- gCGGCCGCaGGUGGgAagCGgCGGGu -5'
26740 5' -64.2 NC_005808.1 + 34019 0.71 0.103091
Target:  5'- uCGCCGugaccgucGUGUCgCGCCUgUCGCUGCCCGc -3'
miRNA:   3'- -GCGGC--------CGCAG-GUGGGaAGCGGCGGGU- -5'
26740 5' -64.2 NC_005808.1 + 5528 0.71 0.108826
Target:  5'- aCGCCGGCcgcccagguUCCGCCCaggUCGCcCGCCaCGg -3'
miRNA:   3'- -GCGGCCGc--------AGGUGGGa--AGCG-GCGG-GU- -5'
26740 5' -64.2 NC_005808.1 + 18093 0.71 0.117992
Target:  5'- aGCCGGCGcgaaccaggaCGCCUUcgCGCCGUCCGg -3'
miRNA:   3'- gCGGCCGCag--------GUGGGAa-GCGGCGGGU- -5'
26740 5' -64.2 NC_005808.1 + 7231 0.7 0.124496
Target:  5'- gCGCC-GCGcUCACCCUcggcgaugUCgGCCGCCCAg -3'
miRNA:   3'- -GCGGcCGCaGGUGGGA--------AG-CGGCGGGU- -5'
26740 5' -64.2 NC_005808.1 + 16817 0.7 0.124496
Target:  5'- gCGCCGcGCGcaucgcggCCAUCgUUgcCGCCGCCCAg -3'
miRNA:   3'- -GCGGC-CGCa-------GGUGGgAA--GCGGCGGGU- -5'
26740 5' -64.2 NC_005808.1 + 8184 0.7 0.134879
Target:  5'- gCGCUGGCGUCCuGCCCgUUCGUCaGCgaCAu -3'
miRNA:   3'- -GCGGCCGCAGG-UGGG-AAGCGG-CGg-GU- -5'
26740 5' -64.2 NC_005808.1 + 6396 0.69 0.146052
Target:  5'- gGCCGGC--CgGCCCgguguagUCGCgGCCCAu -3'
miRNA:   3'- gCGGCCGcaGgUGGGa------AGCGgCGGGU- -5'
26740 5' -64.2 NC_005808.1 + 8625 0.69 0.153964
Target:  5'- gGCCGGUa--CGCCCUUCGgaaaCGCCCc -3'
miRNA:   3'- gCGGCCGcagGUGGGAAGCg---GCGGGu -5'
26740 5' -64.2 NC_005808.1 + 29266 0.69 0.166561
Target:  5'- uCGgCGGCGaCCugCCgaaagccuaCGCCGCCUAc -3'
miRNA:   3'- -GCgGCCGCaGGugGGaa-------GCGGCGGGU- -5'
26740 5' -64.2 NC_005808.1 + 14212 0.68 0.183365
Target:  5'- cCGCCGGCGUCgaacuggaacaccuCGCcaaggaaaccauCCgcgCGCUGCCCGa -3'
miRNA:   3'- -GCGGCCGCAG--------------GUG------------GGaa-GCGGCGGGU- -5'
26740 5' -64.2 NC_005808.1 + 31156 0.68 0.184792
Target:  5'- uGCCGGUGUCgCGCCUUaUCGgCGaCCUg -3'
miRNA:   3'- gCGGCCGCAG-GUGGGA-AGCgGC-GGGu -5'
26740 5' -64.2 NC_005808.1 + 8050 0.68 0.189617
Target:  5'- uGCCGcCGUCCaugacgcgcGCCCaggUCGCUGCCUu -3'
miRNA:   3'- gCGGCcGCAGG---------UGGGa--AGCGGCGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.