Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26740 | 5' | -64.2 | NC_005808.1 | + | 32330 | 0.78 | 0.032145 |
Target: 5'- gGCCGGCGUCCcgaCaacCGCCGCCCAg -3' miRNA: 3'- gCGGCCGCAGGug-GgaaGCGGCGGGU- -5' |
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26740 | 5' | -64.2 | NC_005808.1 | + | 31510 | 0.66 | 0.244199 |
Target: 5'- cCGCCGGCGUgCugCUgggccUCGCUGUguugCCGu -3' miRNA: 3'- -GCGGCCGCAgGugGGa----AGCGGCG----GGU- -5' |
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26740 | 5' | -64.2 | NC_005808.1 | + | 25309 | 0.66 | 0.244199 |
Target: 5'- gGCCGGCccugCCACCggcgcUCGUCGCCgGg -3' miRNA: 3'- gCGGCCGca--GGUGGga---AGCGGCGGgU- -5' |
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26740 | 5' | -64.2 | NC_005808.1 | + | 20176 | 0.66 | 0.2382 |
Target: 5'- gCGCCuugcGGC-UUCGCCUUgUCGUCGCCCu -3' miRNA: 3'- -GCGG----CCGcAGGUGGGA-AGCGGCGGGu -5' |
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26740 | 5' | -64.2 | NC_005808.1 | + | 31994 | 0.67 | 0.220942 |
Target: 5'- aCGCCaGCGUCCugugcgaaACCCUcgacaCGCuggaCGCCCAc -3' miRNA: 3'- -GCGGcCGCAGG--------UGGGAa----GCG----GCGGGU- -5' |
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26740 | 5' | -64.2 | NC_005808.1 | + | 21753 | 0.67 | 0.213259 |
Target: 5'- gGCC-GCGUCCACauaggacagGCCGCCCGg -3' miRNA: 3'- gCGGcCGCAGGUGggaag----CGGCGGGU- -5' |
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26740 | 5' | -64.2 | NC_005808.1 | + | 10528 | 0.67 | 0.210037 |
Target: 5'- cCGCCGGCca-CGCUUUcCGCCGCCa- -3' miRNA: 3'- -GCGGCCGcagGUGGGAaGCGGCGGgu -5' |
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26740 | 5' | -64.2 | NC_005808.1 | + | 23760 | 0.67 | 0.1996 |
Target: 5'- uGCCGGCG-CCACCgggccgaugCGCCGCg-- -3' miRNA: 3'- gCGGCCGCaGGUGGgaa------GCGGCGggu -5' |
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26740 | 5' | -64.2 | NC_005808.1 | + | 1157 | 0.68 | 0.194552 |
Target: 5'- aCGgCGGCgGUCaCGCCCcacauagucUCGCCGCCgGg -3' miRNA: 3'- -GCgGCCG-CAG-GUGGGa--------AGCGGCGGgU- -5' |
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26740 | 5' | -64.2 | NC_005808.1 | + | 8050 | 0.68 | 0.189617 |
Target: 5'- uGCCGcCGUCCaugacgcgcGCCCaggUCGCUGCCUu -3' miRNA: 3'- gCGGCcGCAGG---------UGGGa--AGCGGCGGGu -5' |
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26740 | 5' | -64.2 | NC_005808.1 | + | 3988 | 0.68 | 0.189617 |
Target: 5'- aCGCCaGCagauagauGUCCGCCCaaaacgCGCCGgCCAc -3' miRNA: 3'- -GCGGcCG--------CAGGUGGGaa----GCGGCgGGU- -5' |
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26740 | 5' | -64.2 | NC_005808.1 | + | 6396 | 0.69 | 0.146052 |
Target: 5'- gGCCGGC--CgGCCCgguguagUCGCgGCCCAu -3' miRNA: 3'- gCGGCCGcaGgUGGGa------AGCGgCGGGU- -5' |
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26740 | 5' | -64.2 | NC_005808.1 | + | 7231 | 0.7 | 0.124496 |
Target: 5'- gCGCC-GCGcUCACCCUcggcgaugUCgGCCGCCCAg -3' miRNA: 3'- -GCGGcCGCaGGUGGGA--------AG-CGGCGGGU- -5' |
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26740 | 5' | -64.2 | NC_005808.1 | + | 18093 | 0.71 | 0.117992 |
Target: 5'- aGCCGGCGcgaaccaggaCGCCUUcgCGCCGUCCGg -3' miRNA: 3'- gCGGCCGCag--------GUGGGAa-GCGGCGGGU- -5' |
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26740 | 5' | -64.2 | NC_005808.1 | + | 5528 | 0.71 | 0.108826 |
Target: 5'- aCGCCGGCcgcccagguUCCGCCCaggUCGCcCGCCaCGg -3' miRNA: 3'- -GCGGCCGc--------AGGUGGGa--AGCG-GCGG-GU- -5' |
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26740 | 5' | -64.2 | NC_005808.1 | + | 34019 | 0.71 | 0.103091 |
Target: 5'- uCGCCGugaccgucGUGUCgCGCCUgUCGCUGCCCGc -3' miRNA: 3'- -GCGGC--------CGCAG-GUGGGaAGCGGCGGGU- -5' |
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26740 | 5' | -64.2 | NC_005808.1 | + | 693 | 0.71 | 0.100332 |
Target: 5'- gCGCCGGCcgggCCGCCCaagauaCCGCCCAg -3' miRNA: 3'- -GCGGCCGca--GGUGGGaagc--GGCGGGU- -5' |
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26740 | 5' | -64.2 | NC_005808.1 | + | 1503 | 0.72 | 0.097642 |
Target: 5'- uGCUGGuCGgacauggcgCC-CCCUuauUCGCCGCCCAg -3' miRNA: 3'- gCGGCC-GCa--------GGuGGGA---AGCGGCGGGU- -5' |
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26740 | 5' | -64.2 | NC_005808.1 | + | 34702 | 0.73 | 0.078455 |
Target: 5'- aGCUGGCGaUCUACgCacgCGCCGCCCu -3' miRNA: 3'- gCGGCCGC-AGGUGgGaa-GCGGCGGGu -5' |
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26740 | 5' | -64.2 | NC_005808.1 | + | 7784 | 1.08 | 0.000138 |
Target: 5'- gCGCCGGCGUCCACCCUUCGCCGCCCAg -3' miRNA: 3'- -GCGGCCGCAGGUGGGAAGCGGCGGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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