miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26740 5' -64.2 NC_005808.1 + 32330 0.78 0.032145
Target:  5'- gGCCGGCGUCCcgaCaacCGCCGCCCAg -3'
miRNA:   3'- gCGGCCGCAGGug-GgaaGCGGCGGGU- -5'
26740 5' -64.2 NC_005808.1 + 31510 0.66 0.244199
Target:  5'- cCGCCGGCGUgCugCUgggccUCGCUGUguugCCGu -3'
miRNA:   3'- -GCGGCCGCAgGugGGa----AGCGGCG----GGU- -5'
26740 5' -64.2 NC_005808.1 + 25309 0.66 0.244199
Target:  5'- gGCCGGCccugCCACCggcgcUCGUCGCCgGg -3'
miRNA:   3'- gCGGCCGca--GGUGGga---AGCGGCGGgU- -5'
26740 5' -64.2 NC_005808.1 + 20176 0.66 0.2382
Target:  5'- gCGCCuugcGGC-UUCGCCUUgUCGUCGCCCu -3'
miRNA:   3'- -GCGG----CCGcAGGUGGGA-AGCGGCGGGu -5'
26740 5' -64.2 NC_005808.1 + 31994 0.67 0.220942
Target:  5'- aCGCCaGCGUCCugugcgaaACCCUcgacaCGCuggaCGCCCAc -3'
miRNA:   3'- -GCGGcCGCAGG--------UGGGAa----GCG----GCGGGU- -5'
26740 5' -64.2 NC_005808.1 + 21753 0.67 0.213259
Target:  5'- gGCC-GCGUCCACauaggacagGCCGCCCGg -3'
miRNA:   3'- gCGGcCGCAGGUGggaag----CGGCGGGU- -5'
26740 5' -64.2 NC_005808.1 + 10528 0.67 0.210037
Target:  5'- cCGCCGGCca-CGCUUUcCGCCGCCa- -3'
miRNA:   3'- -GCGGCCGcagGUGGGAaGCGGCGGgu -5'
26740 5' -64.2 NC_005808.1 + 23760 0.67 0.1996
Target:  5'- uGCCGGCG-CCACCgggccgaugCGCCGCg-- -3'
miRNA:   3'- gCGGCCGCaGGUGGgaa------GCGGCGggu -5'
26740 5' -64.2 NC_005808.1 + 1157 0.68 0.194552
Target:  5'- aCGgCGGCgGUCaCGCCCcacauagucUCGCCGCCgGg -3'
miRNA:   3'- -GCgGCCG-CAG-GUGGGa--------AGCGGCGGgU- -5'
26740 5' -64.2 NC_005808.1 + 8050 0.68 0.189617
Target:  5'- uGCCGcCGUCCaugacgcgcGCCCaggUCGCUGCCUu -3'
miRNA:   3'- gCGGCcGCAGG---------UGGGa--AGCGGCGGGu -5'
26740 5' -64.2 NC_005808.1 + 3988 0.68 0.189617
Target:  5'- aCGCCaGCagauagauGUCCGCCCaaaacgCGCCGgCCAc -3'
miRNA:   3'- -GCGGcCG--------CAGGUGGGaa----GCGGCgGGU- -5'
26740 5' -64.2 NC_005808.1 + 6396 0.69 0.146052
Target:  5'- gGCCGGC--CgGCCCgguguagUCGCgGCCCAu -3'
miRNA:   3'- gCGGCCGcaGgUGGGa------AGCGgCGGGU- -5'
26740 5' -64.2 NC_005808.1 + 7231 0.7 0.124496
Target:  5'- gCGCC-GCGcUCACCCUcggcgaugUCgGCCGCCCAg -3'
miRNA:   3'- -GCGGcCGCaGGUGGGA--------AG-CGGCGGGU- -5'
26740 5' -64.2 NC_005808.1 + 18093 0.71 0.117992
Target:  5'- aGCCGGCGcgaaccaggaCGCCUUcgCGCCGUCCGg -3'
miRNA:   3'- gCGGCCGCag--------GUGGGAa-GCGGCGGGU- -5'
26740 5' -64.2 NC_005808.1 + 5528 0.71 0.108826
Target:  5'- aCGCCGGCcgcccagguUCCGCCCaggUCGCcCGCCaCGg -3'
miRNA:   3'- -GCGGCCGc--------AGGUGGGa--AGCG-GCGG-GU- -5'
26740 5' -64.2 NC_005808.1 + 34019 0.71 0.103091
Target:  5'- uCGCCGugaccgucGUGUCgCGCCUgUCGCUGCCCGc -3'
miRNA:   3'- -GCGGC--------CGCAG-GUGGGaAGCGGCGGGU- -5'
26740 5' -64.2 NC_005808.1 + 693 0.71 0.100332
Target:  5'- gCGCCGGCcgggCCGCCCaagauaCCGCCCAg -3'
miRNA:   3'- -GCGGCCGca--GGUGGGaagc--GGCGGGU- -5'
26740 5' -64.2 NC_005808.1 + 1503 0.72 0.097642
Target:  5'- uGCUGGuCGgacauggcgCC-CCCUuauUCGCCGCCCAg -3'
miRNA:   3'- gCGGCC-GCa--------GGuGGGA---AGCGGCGGGU- -5'
26740 5' -64.2 NC_005808.1 + 34702 0.73 0.078455
Target:  5'- aGCUGGCGaUCUACgCacgCGCCGCCCu -3'
miRNA:   3'- gCGGCCGC-AGGUGgGaa-GCGGCGGGu -5'
26740 5' -64.2 NC_005808.1 + 7784 1.08 0.000138
Target:  5'- gCGCCGGCGUCCACCCUUCGCCGCCCAg -3'
miRNA:   3'- -GCGGCCGCAGGUGGGAAGCGGCGGGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.