miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26740 5' -64.2 NC_005808.1 + 33376 0.66 0.2382
Target:  5'- cCGCCgGGCGcgCCGCagaaCgugCGCCGCgCCGc -3'
miRNA:   3'- -GCGG-CCGCa-GGUGg---Gaa-GCGGCG-GGU- -5'
26740 5' -64.2 NC_005808.1 + 29638 0.73 0.072235
Target:  5'- uGCCGGUGUCCAUUCgcgCGaacaucCCGCCCGa -3'
miRNA:   3'- gCGGCCGCAGGUGGGaa-GC------GGCGGGU- -5'
26740 5' -64.2 NC_005808.1 + 7929 0.72 0.092465
Target:  5'- gCGCuCGGCGUCCACCUUcaCGCCacgGCCa- -3'
miRNA:   3'- -GCG-GCCGCAGGUGGGAa-GCGG---CGGgu -5'
26740 5' -64.2 NC_005808.1 + 41921 0.71 0.103091
Target:  5'- gGCCGGCG-CCGCCgUagGCgGCCUg -3'
miRNA:   3'- gCGGCCGCaGGUGGgAagCGgCGGGu -5'
26740 5' -64.2 NC_005808.1 + 19178 0.67 0.220942
Target:  5'- gGCCGGCGUCgCACugaCCggCG-CGCUCAu -3'
miRNA:   3'- gCGGCCGCAG-GUG---GGaaGCgGCGGGU- -5'
26740 5' -64.2 NC_005808.1 + 16817 0.7 0.124496
Target:  5'- gCGCCGcGCGcaucgcggCCAUCgUUgcCGCCGCCCAg -3'
miRNA:   3'- -GCGGC-CGCa-------GGUGGgAA--GCGGCGGGU- -5'
26740 5' -64.2 NC_005808.1 + 14212 0.68 0.183365
Target:  5'- cCGCCGGCGUCgaacuggaacaccuCGCcaaggaaaccauCCgcgCGCUGCCCGa -3'
miRNA:   3'- -GCGGCCGCAG--------------GUG------------GGaa-GCGGCGGGU- -5'
26740 5' -64.2 NC_005808.1 + 6736 0.67 0.215431
Target:  5'- aGCaCGGCGUCgGCCU--UGgCGCCCc -3'
miRNA:   3'- gCG-GCCGCAGgUGGGaaGCgGCGGGu -5'
26740 5' -64.2 NC_005808.1 + 33117 0.66 0.232326
Target:  5'- gGCUGGCaugaCGCCCgaagaaUUCGCUGCCUAu -3'
miRNA:   3'- gCGGCCGcag-GUGGG------AAGCGGCGGGU- -5'
26740 5' -64.2 NC_005808.1 + 13275 0.66 0.250322
Target:  5'- gGCCGGCGaCCGCCa----CCGCCUu -3'
miRNA:   3'- gCGGCCGCaGGUGGgaagcGGCGGGu -5'
26740 5' -64.2 NC_005808.1 + 20348 0.66 0.269454
Target:  5'- gGCCGGCGaaUACgCCaUCGCgGCCg- -3'
miRNA:   3'- gCGGCCGCagGUG-GGaAGCGgCGGgu -5'
26740 5' -64.2 NC_005808.1 + 8625 0.69 0.153964
Target:  5'- gGCCGGUa--CGCCCUUCGgaaaCGCCCc -3'
miRNA:   3'- gCGGCCGcagGUGGGAAGCg---GCGGGu -5'
26740 5' -64.2 NC_005808.1 + 8184 0.7 0.134879
Target:  5'- gCGCUGGCGUCCuGCCCgUUCGUCaGCgaCAu -3'
miRNA:   3'- -GCGGCCGCAGG-UGGG-AAGCGG-CGg-GU- -5'
26740 5' -64.2 NC_005808.1 + 27194 0.67 0.220942
Target:  5'- uGCauCGGuCGUCCGgcaUCUUCGCCGgCCCGc -3'
miRNA:   3'- gCG--GCC-GCAGGUg--GGAAGCGGC-GGGU- -5'
26740 5' -64.2 NC_005808.1 + 40178 0.67 0.220942
Target:  5'- gGCCGGCcugCUGCCgUacaccuacgcUUGCCGCCCu -3'
miRNA:   3'- gCGGCCGca-GGUGGgA----------AGCGGCGGGu -5'
26740 5' -64.2 NC_005808.1 + 29266 0.69 0.166561
Target:  5'- uCGgCGGCGaCCugCCgaaagccuaCGCCGCCUAc -3'
miRNA:   3'- -GCgGCCGCaGGugGGaa-------GCGGCGGGU- -5'
26740 5' -64.2 NC_005808.1 + 41868 0.66 0.244199
Target:  5'- gGCCGGCGUugUCGgCaaa-GCCGCCCc -3'
miRNA:   3'- gCGGCCGCA--GGUgGgaagCGGCGGGu -5'
26740 5' -64.2 NC_005808.1 + 14389 0.66 0.250322
Target:  5'- uCGUCGGCGUggCCgACCUggacaaggCGCCGCaCCu -3'
miRNA:   3'- -GCGGCCGCA--GG-UGGGaa------GCGGCG-GGu -5'
26740 5' -64.2 NC_005808.1 + 31156 0.68 0.184792
Target:  5'- uGCCGGUGUCgCGCCUUaUCGgCGaCCUg -3'
miRNA:   3'- gCGGCCGCAG-GUGGGA-AGCgGC-GGGu -5'
26740 5' -64.2 NC_005808.1 + 26175 0.67 0.220942
Target:  5'- cCGCCGGCGaUUACCC--CGCgGCCg- -3'
miRNA:   3'- -GCGGCCGCaGGUGGGaaGCGgCGGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.