Results 1 - 20 of 37 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26741 | 3' | -53.6 | NC_005808.1 | + | 34126 | 0.66 | 0.754044 |
Target: 5'- cGCGUcggcUGCgGCAUCGCag-GCcACCUCGa -3' miRNA: 3'- -CGCAa---ACG-CGUAGUGcgaCG-UGGAGC- -5' |
|||||||
26741 | 3' | -53.6 | NC_005808.1 | + | 20279 | 0.66 | 0.754044 |
Target: 5'- cGCGUUcgGCacggccagcaGCAUCGUGCUGCccgACUUCGa -3' miRNA: 3'- -CGCAAa-CG----------CGUAGUGCGACG---UGGAGC- -5' |
|||||||
26741 | 3' | -53.6 | NC_005808.1 | + | 9517 | 0.66 | 0.74333 |
Target: 5'- gGCGaacagUG-GCAUCAUGCUGCgGCCcuguUCGg -3' miRNA: 3'- -CGCaa---ACgCGUAGUGCGACG-UGG----AGC- -5' |
|||||||
26741 | 3' | -53.6 | NC_005808.1 | + | 38890 | 0.66 | 0.74333 |
Target: 5'- aGCGgaUGCGCcgCAUgggGCaGCGCgUCGc -3' miRNA: 3'- -CGCaaACGCGuaGUG---CGaCGUGgAGC- -5' |
|||||||
26741 | 3' | -53.6 | NC_005808.1 | + | 27752 | 0.66 | 0.74333 |
Target: 5'- -----cGCGCAaCuCGCUGC-CCUCGu -3' miRNA: 3'- cgcaaaCGCGUaGuGCGACGuGGAGC- -5' |
|||||||
26741 | 3' | -53.6 | NC_005808.1 | + | 14770 | 0.66 | 0.740092 |
Target: 5'- aGCGUgucggUGUcgaucuGCuUCACGaugucgcuggaaacCUGCACCUCGg -3' miRNA: 3'- -CGCAa----ACG------CGuAGUGC--------------GACGUGGAGC- -5' |
|||||||
26741 | 3' | -53.6 | NC_005808.1 | + | 10122 | 0.66 | 0.721555 |
Target: 5'- uCGg--GCGCAUCGgcCGCcccCACCUCGg -3' miRNA: 3'- cGCaaaCGCGUAGU--GCGac-GUGGAGC- -5' |
|||||||
26741 | 3' | -53.6 | NC_005808.1 | + | 11081 | 0.66 | 0.721555 |
Target: 5'- cGUGUccGgGUcgCGCGCgaGCACCUUGu -3' miRNA: 3'- -CGCAaaCgCGuaGUGCGa-CGUGGAGC- -5' |
|||||||
26741 | 3' | -53.6 | NC_005808.1 | + | 37463 | 0.66 | 0.699401 |
Target: 5'- cCGccUGCGCggCACGUUGCAgUUCa -3' miRNA: 3'- cGCaaACGCGuaGUGCGACGUgGAGc -5' |
|||||||
26741 | 3' | -53.6 | NC_005808.1 | + | 12549 | 0.67 | 0.688213 |
Target: 5'- gGCGUcggugaauuucUUGCcgGCcUCGCGCUGCGCggCGa -3' miRNA: 3'- -CGCA-----------AACG--CGuAGUGCGACGUGgaGC- -5' |
|||||||
26741 | 3' | -53.6 | NC_005808.1 | + | 2947 | 0.67 | 0.676969 |
Target: 5'- ------cCGCGUCGCGCgGCACgUCGa -3' miRNA: 3'- cgcaaacGCGUAGUGCGaCGUGgAGC- -5' |
|||||||
26741 | 3' | -53.6 | NC_005808.1 | + | 40027 | 0.67 | 0.676969 |
Target: 5'- aGCGc--GCGCA-CGCGCUGgGCCgugUCGc -3' miRNA: 3'- -CGCaaaCGCGUaGUGCGACgUGG---AGC- -5' |
|||||||
26741 | 3' | -53.6 | NC_005808.1 | + | 8342 | 0.67 | 0.665679 |
Target: 5'- cGCGUgcGUGC-UCAUGCcaGUACCUCc -3' miRNA: 3'- -CGCAaaCGCGuAGUGCGa-CGUGGAGc -5' |
|||||||
26741 | 3' | -53.6 | NC_005808.1 | + | 1667 | 0.67 | 0.665679 |
Target: 5'- cUGUUUGCGCGUgAUGCUGCcgcGCagguagUCGa -3' miRNA: 3'- cGCAAACGCGUAgUGCGACG---UGg-----AGC- -5' |
|||||||
26741 | 3' | -53.6 | NC_005808.1 | + | 27013 | 0.67 | 0.654356 |
Target: 5'- gGCGcg-GUGCAUC-CGCaGCGCgUCGu -3' miRNA: 3'- -CGCaaaCGCGUAGuGCGaCGUGgAGC- -5' |
|||||||
26741 | 3' | -53.6 | NC_005808.1 | + | 27837 | 0.67 | 0.643011 |
Target: 5'- cGCGgugGCGCcggcCGCGCcGCugCUCa -3' miRNA: 3'- -CGCaaaCGCGua--GUGCGaCGugGAGc -5' |
|||||||
26741 | 3' | -53.6 | NC_005808.1 | + | 12608 | 0.68 | 0.608956 |
Target: 5'- --aUUUGCGCAUgGCGCcGaCGCgCUCGg -3' miRNA: 3'- cgcAAACGCGUAgUGCGaC-GUG-GAGC- -5' |
|||||||
26741 | 3' | -53.6 | NC_005808.1 | + | 15127 | 0.68 | 0.586341 |
Target: 5'- cGCGUggugcgUGCGCggCGCGCUggcauaccaGCGCCagGg -3' miRNA: 3'- -CGCAa-----ACGCGuaGUGCGA---------CGUGGagC- -5' |
|||||||
26741 | 3' | -53.6 | NC_005808.1 | + | 30472 | 0.68 | 0.586341 |
Target: 5'- cGCGUg-GCGCGUCGCGCca-ACCUg- -3' miRNA: 3'- -CGCAaaCGCGUAGUGCGacgUGGAgc -5' |
|||||||
26741 | 3' | -53.6 | NC_005808.1 | + | 6010 | 0.69 | 0.563889 |
Target: 5'- aGCGUgcGUGCcguUCugGauagGCACCUCGc -3' miRNA: 3'- -CGCAaaCGCGu--AGugCga--CGUGGAGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home