Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26741 | 3' | -53.6 | NC_005808.1 | + | 3647 | 0.77 | 0.192116 |
Target: 5'- -gGUUUGCGUuuacUCACGCcaGCACCUCGu -3' miRNA: 3'- cgCAAACGCGu---AGUGCGa-CGUGGAGC- -5' |
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26741 | 3' | -53.6 | NC_005808.1 | + | 27013 | 0.67 | 0.654356 |
Target: 5'- gGCGcg-GUGCAUC-CGCaGCGCgUCGu -3' miRNA: 3'- -CGCaaaCGCGUAGuGCGaCGUGgAGC- -5' |
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26741 | 3' | -53.6 | NC_005808.1 | + | 6010 | 0.69 | 0.563889 |
Target: 5'- aGCGUgcGUGCcguUCugGauagGCACCUCGc -3' miRNA: 3'- -CGCAaaCGCGu--AGugCga--CGUGGAGC- -5' |
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26741 | 3' | -53.6 | NC_005808.1 | + | 35432 | 0.69 | 0.519753 |
Target: 5'- gGCGUcaGCGCGUCGgGCcUGgGCUUCa -3' miRNA: 3'- -CGCAaaCGCGUAGUgCG-ACgUGGAGc -5' |
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26741 | 3' | -53.6 | NC_005808.1 | + | 14809 | 0.7 | 0.47704 |
Target: 5'- uGCGgcUGCGCG--GCGC-GCGCUUCGu -3' miRNA: 3'- -CGCaaACGCGUagUGCGaCGUGGAGC- -5' |
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26741 | 3' | -53.6 | NC_005808.1 | + | 7028 | 0.71 | 0.416457 |
Target: 5'- gGCGUUUGUGCcgCcUGUUGCagcaggcgcaugGCCUCGg -3' miRNA: 3'- -CGCAAACGCGuaGuGCGACG------------UGGAGC- -5' |
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26741 | 3' | -53.6 | NC_005808.1 | + | 2947 | 0.67 | 0.676969 |
Target: 5'- ------cCGCGUCGCGCgGCACgUCGa -3' miRNA: 3'- cgcaaacGCGUAGUGCGaCGUGgAGC- -5' |
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26741 | 3' | -53.6 | NC_005808.1 | + | 30472 | 0.68 | 0.586341 |
Target: 5'- cGCGUg-GCGCGUCGCGCca-ACCUg- -3' miRNA: 3'- -CGCAaaCGCGUAGUGCGacgUGGAgc -5' |
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26741 | 3' | -53.6 | NC_005808.1 | + | 10665 | 0.7 | 0.487562 |
Target: 5'- -aGUcgUGCGUGUCGaGCaGCGCCUCGa -3' miRNA: 3'- cgCAa-ACGCGUAGUgCGaCGUGGAGC- -5' |
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26741 | 3' | -53.6 | NC_005808.1 | + | 4376 | 0.72 | 0.406823 |
Target: 5'- gGCGgaUGCGCAgccaggcgccgUCGCGCcGgGCCUUGa -3' miRNA: 3'- -CGCaaACGCGU-----------AGUGCGaCgUGGAGC- -5' |
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26741 | 3' | -53.6 | NC_005808.1 | + | 6622 | 0.76 | 0.220378 |
Target: 5'- aGCGg--GCGCGUgGCGCUGCGCg-CGg -3' miRNA: 3'- -CGCaaaCGCGUAgUGCGACGUGgaGC- -5' |
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26741 | 3' | -53.6 | NC_005808.1 | + | 10122 | 0.66 | 0.721555 |
Target: 5'- uCGg--GCGCAUCGgcCGCcccCACCUCGg -3' miRNA: 3'- cGCaaaCGCGUAGU--GCGac-GUGGAGC- -5' |
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26741 | 3' | -53.6 | NC_005808.1 | + | 5619 | 0.73 | 0.343453 |
Target: 5'- uGCGUUUcGCGCGUgGCGCggcGCAgCUUGc -3' miRNA: 3'- -CGCAAA-CGCGUAgUGCGa--CGUgGAGC- -5' |
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26741 | 3' | -53.6 | NC_005808.1 | + | 15127 | 0.68 | 0.586341 |
Target: 5'- cGCGUggugcgUGCGCggCGCGCUggcauaccaGCGCCagGg -3' miRNA: 3'- -CGCAa-----ACGCGuaGUGCGA---------CGUGGagC- -5' |
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26741 | 3' | -53.6 | NC_005808.1 | + | 20279 | 0.66 | 0.754044 |
Target: 5'- cGCGUUcgGCacggccagcaGCAUCGUGCUGCccgACUUCGa -3' miRNA: 3'- -CGCAAa-CG----------CGUAGUGCGACG---UGGAGC- -5' |
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26741 | 3' | -53.6 | NC_005808.1 | + | 8342 | 0.67 | 0.665679 |
Target: 5'- cGCGUgcGUGC-UCAUGCcaGUACCUCc -3' miRNA: 3'- -CGCAaaCGCGuAGUGCGa-CGUGGAGc -5' |
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26741 | 3' | -53.6 | NC_005808.1 | + | 37463 | 0.66 | 0.699401 |
Target: 5'- cCGccUGCGCggCACGUUGCAgUUCa -3' miRNA: 3'- cGCaaACGCGuaGUGCGACGUgGAGc -5' |
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26741 | 3' | -53.6 | NC_005808.1 | + | 12549 | 0.67 | 0.688213 |
Target: 5'- gGCGUcggugaauuucUUGCcgGCcUCGCGCUGCGCggCGa -3' miRNA: 3'- -CGCA-----------AACG--CGuAGUGCGACGUGgaGC- -5' |
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26741 | 3' | -53.6 | NC_005808.1 | + | 40027 | 0.67 | 0.676969 |
Target: 5'- aGCGc--GCGCA-CGCGCUGgGCCgugUCGc -3' miRNA: 3'- -CGCaaaCGCGUaGUGCGACgUGG---AGC- -5' |
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26741 | 3' | -53.6 | NC_005808.1 | + | 1667 | 0.67 | 0.665679 |
Target: 5'- cUGUUUGCGCGUgAUGCUGCcgcGCagguagUCGa -3' miRNA: 3'- cGCAAACGCGUAgUGCGACG---UGg-----AGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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