Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26741 | 5' | -60.4 | NC_005808.1 | + | 9858 | 1.08 | 0.000267 |
Target: 5'- cGUCGAUGAGCGUGGCACCGGCGCGCUg -3' miRNA: 3'- -CAGCUACUCGCACCGUGGCCGCGCGA- -5' |
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26741 | 5' | -60.4 | NC_005808.1 | + | 6611 | 0.78 | 0.050608 |
Target: 5'- uGUCGAUGAccagcgggcGCGUGGCGCUG-CGCGCg -3' miRNA: 3'- -CAGCUACU---------CGCACCGUGGCcGCGCGa -5' |
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26741 | 5' | -60.4 | NC_005808.1 | + | 12599 | 0.77 | 0.065547 |
Target: 5'- cGUCGAUGAauuuGCGcaUGGCGCCGaCGCGCUc -3' miRNA: 3'- -CAGCUACU----CGC--ACCGUGGCcGCGCGA- -5' |
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26741 | 5' | -60.4 | NC_005808.1 | + | 9985 | 0.75 | 0.087127 |
Target: 5'- -aCGGUGAGCGUGGCggggucgaaaguGCCG-CGCGCc -3' miRNA: 3'- caGCUACUCGCACCG------------UGGCcGCGCGa -5' |
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26741 | 5' | -60.4 | NC_005808.1 | + | 16236 | 0.71 | 0.16663 |
Target: 5'- cUCGGUGAGCGgcacgauauggcggaUGGCGuuGGCcucGCGCg -3' miRNA: 3'- cAGCUACUCGC---------------ACCGUggCCG---CGCGa -5' |
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26741 | 5' | -60.4 | NC_005808.1 | + | 8161 | 0.71 | 0.178699 |
Target: 5'- cGUCGAUGAuGCGgcccaggaaGGCGCUGGCGUcCUg -3' miRNA: 3'- -CAGCUACU-CGCa--------CCGUGGCCGCGcGA- -5' |
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26741 | 5' | -60.4 | NC_005808.1 | + | 28735 | 0.71 | 0.183544 |
Target: 5'- --gGAUGAGCGccuUGGCAUcguccagcgCGGUGCGCUu -3' miRNA: 3'- cagCUACUCGC---ACCGUG---------GCCGCGCGA- -5' |
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26741 | 5' | -60.4 | NC_005808.1 | + | 18912 | 0.7 | 0.198782 |
Target: 5'- gGUCGAUGAG-GUcGGCGCC--CGCGCUg -3' miRNA: 3'- -CAGCUACUCgCA-CCGUGGccGCGCGA- -5' |
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26741 | 5' | -60.4 | NC_005808.1 | + | 2722 | 0.7 | 0.204101 |
Target: 5'- cGUUGGccggacgcuUGAGCGcGGC-CCGGCGCuGCUc -3' miRNA: 3'- -CAGCU---------ACUCGCaCCGuGGCCGCG-CGA- -5' |
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26741 | 5' | -60.4 | NC_005808.1 | + | 24272 | 0.69 | 0.220803 |
Target: 5'- ----uUGAGCGUGGCGCCGGacaGUGa- -3' miRNA: 3'- cagcuACUCGCACCGUGGCCg--CGCga -5' |
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26741 | 5' | -60.4 | NC_005808.1 | + | 25782 | 0.69 | 0.24487 |
Target: 5'- -aCGAUGGccGCGauGCGCgCGGCGCGCUc -3' miRNA: 3'- caGCUACU--CGCacCGUG-GCCGCGCGA- -5' |
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26741 | 5' | -60.4 | NC_005808.1 | + | 31212 | 0.68 | 0.2577 |
Target: 5'- gGUCGA-GGGCGaaaGCAugaagaaccCCGGCGCGCg -3' miRNA: 3'- -CAGCUaCUCGCac-CGU---------GGCCGCGCGa -5' |
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26741 | 5' | -60.4 | NC_005808.1 | + | 15176 | 0.68 | 0.264319 |
Target: 5'- -cCGccGGGCGcgGuGCGCCaGGCGCGCg -3' miRNA: 3'- caGCuaCUCGCa-C-CGUGG-CCGCGCGa -5' |
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26741 | 5' | -60.4 | NC_005808.1 | + | 4666 | 0.68 | 0.271075 |
Target: 5'- gGUUGuUG-GCG-GGCACCaGCGCGCc -3' miRNA: 3'- -CAGCuACuCGCaCCGUGGcCGCGCGa -5' |
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26741 | 5' | -60.4 | NC_005808.1 | + | 37064 | 0.68 | 0.277969 |
Target: 5'- -gCGAccUGGGCGgaaccugGGCgGCCGGCGUGUc -3' miRNA: 3'- caGCU--ACUCGCa------CCG-UGGCCGCGCGa -5' |
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26741 | 5' | -60.4 | NC_005808.1 | + | 13232 | 0.68 | 0.285002 |
Target: 5'- -cCGAgggcugGGGCaaGGcCACCGGCGCGUg -3' miRNA: 3'- caGCUa-----CUCGcaCC-GUGGCCGCGCGa -5' |
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26741 | 5' | -60.4 | NC_005808.1 | + | 27563 | 0.68 | 0.285002 |
Target: 5'- gGUCGAaguUGcGCGUaaagGGCACCGGCagcaggcgGCGCc -3' miRNA: 3'- -CAGCU---ACuCGCA----CCGUGGCCG--------CGCGa -5' |
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26741 | 5' | -60.4 | NC_005808.1 | + | 11411 | 0.68 | 0.292175 |
Target: 5'- gGUCu-UGAGCaGcGGCgaGCCGGCGUGCa -3' miRNA: 3'- -CAGcuACUCG-CaCCG--UGGCCGCGCGa -5' |
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26741 | 5' | -60.4 | NC_005808.1 | + | 38085 | 0.68 | 0.292175 |
Target: 5'- -gCGAUGcGCucaagcgccuGUGGCGCCG-CGCGCa -3' miRNA: 3'- caGCUACuCG----------CACCGUGGCcGCGCGa -5' |
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26741 | 5' | -60.4 | NC_005808.1 | + | 4178 | 0.67 | 0.306943 |
Target: 5'- gGUCGAgguguagccagUGGGCGccgaaaaguUGGaAUCGGCGCGCa -3' miRNA: 3'- -CAGCU-----------ACUCGC---------ACCgUGGCCGCGCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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