miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26741 5' -60.4 NC_005808.1 + 21101 0.66 0.363069
Target:  5'- cGUCGGUGAGCGcguuuugcuugcUGGUAUCGaCGCuGCc -3'
miRNA:   3'- -CAGCUACUCGC------------ACCGUGGCcGCG-CGa -5'
26741 5' -60.4 NC_005808.1 + 11411 0.68 0.292175
Target:  5'- gGUCu-UGAGCaGcGGCgaGCCGGCGUGCa -3'
miRNA:   3'- -CAGcuACUCG-CaCCG--UGGCCGCGCGa -5'
26741 5' -60.4 NC_005808.1 + 4178 0.67 0.306943
Target:  5'- gGUCGAgguguagccagUGGGCGccgaaaaguUGGaAUCGGCGCGCa -3'
miRNA:   3'- -CAGCU-----------ACUCGC---------ACCgUGGCCGCGCGa -5'
26741 5' -60.4 NC_005808.1 + 34553 0.67 0.322275
Target:  5'- gGUCGAgcagcgguUGAGCGUcgaGGCugucACCGGCGaaGCUg -3'
miRNA:   3'- -CAGCU--------ACUCGCA---CCG----UGGCCGCg-CGA- -5'
26741 5' -60.4 NC_005808.1 + 16759 0.67 0.330152
Target:  5'- cUCG-UGGGCGUaGcCACCGGCGaCGUg -3'
miRNA:   3'- cAGCuACUCGCAcC-GUGGCCGC-GCGa -5'
26741 5' -60.4 NC_005808.1 + 27829 0.67 0.338171
Target:  5'- -gCGcUGcccGCgGUGGCGCCGGCcGCGCc -3'
miRNA:   3'- caGCuACu--CG-CACCGUGGCCG-CGCGa -5'
26741 5' -60.4 NC_005808.1 + 14618 0.67 0.338171
Target:  5'- cGUCGGcuuccauGCuuccGGCGCCGGUGCGCa -3'
miRNA:   3'- -CAGCUacu----CGca--CCGUGGCCGCGCGa -5'
26741 5' -60.4 NC_005808.1 + 219 0.66 0.363069
Target:  5'- -gCGAacUG-GCGcaccucGGCAUUGGCGCGCUg -3'
miRNA:   3'- caGCU--ACuCGCa-----CCGUGGCCGCGCGA- -5'
26741 5' -60.4 NC_005808.1 + 5243 0.66 0.363069
Target:  5'- -aCGGUGuugacguuGGCGuUGGCACCGGCcaccGUGUUg -3'
miRNA:   3'- caGCUAC--------UCGC-ACCGUGGCCG----CGCGA- -5'
26741 5' -60.4 NC_005808.1 + 38085 0.68 0.292175
Target:  5'- -gCGAUGcGCucaagcgccuGUGGCGCCG-CGCGCa -3'
miRNA:   3'- caGCUACuCG----------CACCGUGGCcGCGCGa -5'
26741 5' -60.4 NC_005808.1 + 27563 0.68 0.285002
Target:  5'- gGUCGAaguUGcGCGUaaagGGCACCGGCagcaggcgGCGCc -3'
miRNA:   3'- -CAGCU---ACuCGCA----CCGUGGCCG--------CGCGa -5'
26741 5' -60.4 NC_005808.1 + 4666 0.68 0.271075
Target:  5'- gGUUGuUG-GCG-GGCACCaGCGCGCc -3'
miRNA:   3'- -CAGCuACuCGCaCCGUGGcCGCGCGa -5'
26741 5' -60.4 NC_005808.1 + 12599 0.77 0.065547
Target:  5'- cGUCGAUGAauuuGCGcaUGGCGCCGaCGCGCUc -3'
miRNA:   3'- -CAGCUACU----CGC--ACCGUGGCcGCGCGA- -5'
26741 5' -60.4 NC_005808.1 + 9985 0.75 0.087127
Target:  5'- -aCGGUGAGCGUGGCggggucgaaaguGCCG-CGCGCc -3'
miRNA:   3'- caGCUACUCGCACCG------------UGGCcGCGCGa -5'
26741 5' -60.4 NC_005808.1 + 16236 0.71 0.16663
Target:  5'- cUCGGUGAGCGgcacgauauggcggaUGGCGuuGGCcucGCGCg -3'
miRNA:   3'- cAGCUACUCGC---------------ACCGUggCCG---CGCGa -5'
26741 5' -60.4 NC_005808.1 + 28735 0.71 0.183544
Target:  5'- --gGAUGAGCGccuUGGCAUcguccagcgCGGUGCGCUu -3'
miRNA:   3'- cagCUACUCGC---ACCGUG---------GCCGCGCGA- -5'
26741 5' -60.4 NC_005808.1 + 18912 0.7 0.198782
Target:  5'- gGUCGAUGAG-GUcGGCGCC--CGCGCUg -3'
miRNA:   3'- -CAGCUACUCgCA-CCGUGGccGCGCGA- -5'
26741 5' -60.4 NC_005808.1 + 24272 0.69 0.220803
Target:  5'- ----uUGAGCGUGGCGCCGGacaGUGa- -3'
miRNA:   3'- cagcuACUCGCACCGUGGCCg--CGCga -5'
26741 5' -60.4 NC_005808.1 + 25782 0.69 0.24487
Target:  5'- -aCGAUGGccGCGauGCGCgCGGCGCGCUc -3'
miRNA:   3'- caGCUACU--CGCacCGUG-GCCGCGCGA- -5'
26741 5' -60.4 NC_005808.1 + 31212 0.68 0.2577
Target:  5'- gGUCGA-GGGCGaaaGCAugaagaaccCCGGCGCGCg -3'
miRNA:   3'- -CAGCUaCUCGCac-CGU---------GGCCGCGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.