miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26741 5' -60.4 NC_005808.1 + 219 0.66 0.363069
Target:  5'- -gCGAacUG-GCGcaccucGGCAUUGGCGCGCUg -3'
miRNA:   3'- caGCU--ACuCGCa-----CCGUGGCCGCGCGA- -5'
26741 5' -60.4 NC_005808.1 + 2722 0.7 0.204101
Target:  5'- cGUUGGccggacgcuUGAGCGcGGC-CCGGCGCuGCUc -3'
miRNA:   3'- -CAGCU---------ACUCGCaCCGuGGCCGCG-CGA- -5'
26741 5' -60.4 NC_005808.1 + 4178 0.67 0.306943
Target:  5'- gGUCGAgguguagccagUGGGCGccgaaaaguUGGaAUCGGCGCGCa -3'
miRNA:   3'- -CAGCU-----------ACUCGC---------ACCgUGGCCGCGCGa -5'
26741 5' -60.4 NC_005808.1 + 4666 0.68 0.271075
Target:  5'- gGUUGuUG-GCG-GGCACCaGCGCGCc -3'
miRNA:   3'- -CAGCuACuCGCaCCGUGGcCGCGCGa -5'
26741 5' -60.4 NC_005808.1 + 5243 0.66 0.363069
Target:  5'- -aCGGUGuugacguuGGCGuUGGCACCGGCcaccGUGUUg -3'
miRNA:   3'- caGCUAC--------UCGC-ACCGUGGCCG----CGCGA- -5'
26741 5' -60.4 NC_005808.1 + 6611 0.78 0.050608
Target:  5'- uGUCGAUGAccagcgggcGCGUGGCGCUG-CGCGCg -3'
miRNA:   3'- -CAGCUACU---------CGCACCGUGGCcGCGCGa -5'
26741 5' -60.4 NC_005808.1 + 8161 0.71 0.178699
Target:  5'- cGUCGAUGAuGCGgcccaggaaGGCGCUGGCGUcCUg -3'
miRNA:   3'- -CAGCUACU-CGCa--------CCGUGGCCGCGcGA- -5'
26741 5' -60.4 NC_005808.1 + 9858 1.08 0.000267
Target:  5'- cGUCGAUGAGCGUGGCACCGGCGCGCUg -3'
miRNA:   3'- -CAGCUACUCGCACCGUGGCCGCGCGA- -5'
26741 5' -60.4 NC_005808.1 + 9985 0.75 0.087127
Target:  5'- -aCGGUGAGCGUGGCggggucgaaaguGCCG-CGCGCc -3'
miRNA:   3'- caGCUACUCGCACCG------------UGGCcGCGCGa -5'
26741 5' -60.4 NC_005808.1 + 10853 0.66 0.380361
Target:  5'- gGUCGAgcagGcccuGCGUGGCuuCGGUcgGCGCg -3'
miRNA:   3'- -CAGCUa---Cu---CGCACCGugGCCG--CGCGa -5'
26741 5' -60.4 NC_005808.1 + 11411 0.68 0.292175
Target:  5'- gGUCu-UGAGCaGcGGCgaGCCGGCGUGCa -3'
miRNA:   3'- -CAGcuACUCG-CaCCG--UGGCCGCGCGa -5'
26741 5' -60.4 NC_005808.1 + 12599 0.77 0.065547
Target:  5'- cGUCGAUGAauuuGCGcaUGGCGCCGaCGCGCUc -3'
miRNA:   3'- -CAGCUACU----CGC--ACCGUGGCcGCGCGA- -5'
26741 5' -60.4 NC_005808.1 + 13232 0.68 0.285002
Target:  5'- -cCGAgggcugGGGCaaGGcCACCGGCGCGUg -3'
miRNA:   3'- caGCUa-----CUCGcaCC-GUGGCCGCGCGa -5'
26741 5' -60.4 NC_005808.1 + 14618 0.67 0.338171
Target:  5'- cGUCGGcuuccauGCuuccGGCGCCGGUGCGCa -3'
miRNA:   3'- -CAGCUacu----CGca--CCGUGGCCGCGCGa -5'
26741 5' -60.4 NC_005808.1 + 15176 0.68 0.264319
Target:  5'- -cCGccGGGCGcgGuGCGCCaGGCGCGCg -3'
miRNA:   3'- caGCuaCUCGCa-C-CGUGG-CCGCGCGa -5'
26741 5' -60.4 NC_005808.1 + 16236 0.71 0.16663
Target:  5'- cUCGGUGAGCGgcacgauauggcggaUGGCGuuGGCcucGCGCg -3'
miRNA:   3'- cAGCUACUCGC---------------ACCGUggCCG---CGCGa -5'
26741 5' -60.4 NC_005808.1 + 16759 0.67 0.330152
Target:  5'- cUCG-UGGGCGUaGcCACCGGCGaCGUg -3'
miRNA:   3'- cAGCuACUCGCAcC-GUGGCCGC-GCGa -5'
26741 5' -60.4 NC_005808.1 + 18450 0.67 0.306943
Target:  5'- cGUCGA--GGCGcUGG-GCCaGGCGCGCa -3'
miRNA:   3'- -CAGCUacUCGC-ACCgUGG-CCGCGCGa -5'
26741 5' -60.4 NC_005808.1 + 18839 0.66 0.371646
Target:  5'- -gCGcAUcGGCccgGUGGCGCCGGCaugGCGCUg -3'
miRNA:   3'- caGC-UAcUCG---CACCGUGGCCG---CGCGA- -5'
26741 5' -60.4 NC_005808.1 + 18912 0.7 0.198782
Target:  5'- gGUCGAUGAG-GUcGGCGCC--CGCGCUg -3'
miRNA:   3'- -CAGCUACUCgCA-CCGUGGccGCGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.