miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26742 3' -62 NC_005808.1 + 38580 0.66 0.308246
Target:  5'- cGCGGCaugaCGCUGGUGGCCggCGCg--- -3'
miRNA:   3'- aCGUCGc---GCGGCUACCGGa-GCGguga -5'
26742 3' -62 NC_005808.1 + 36223 0.66 0.308246
Target:  5'- gGCcuGCGCcugauuGCCGAcgugGGCCgguUCGCCACc -3'
miRNA:   3'- aCGu-CGCG------CGGCUa---CCGG---AGCGGUGa -5'
26742 3' -62 NC_005808.1 + 10226 0.66 0.308246
Target:  5'- cUGCugGGCG-GCCGG-GGCCUCgGCgGCg -3'
miRNA:   3'- -ACG--UCGCgCGGCUaCCGGAG-CGgUGa -5'
26742 3' -62 NC_005808.1 + 28317 0.66 0.307495
Target:  5'- -uCGGCGCGCucggcgucggacuCGAUGGCCUUgGCCuCg -3'
miRNA:   3'- acGUCGCGCG-------------GCUACCGGAG-CGGuGa -5'
26742 3' -62 NC_005808.1 + 18835 0.66 0.305997
Target:  5'- cGCGGCgcaucggcccggugGCGCCGGcaUGGCgCUgcugcgCGCCACc -3'
miRNA:   3'- aCGUCG--------------CGCGGCU--ACCG-GA------GCGGUGa -5'
26742 3' -62 NC_005808.1 + 14760 0.66 0.300798
Target:  5'- aGCAGCgGCGC----GGCCggCGCCACc -3'
miRNA:   3'- aCGUCG-CGCGgcuaCCGGa-GCGGUGa -5'
26742 3' -62 NC_005808.1 + 5138 0.66 0.300798
Target:  5'- cUGCAaCGUGCCGcgcaggcGGCCgUCGCUGCUc -3'
miRNA:   3'- -ACGUcGCGCGGCua-----CCGG-AGCGGUGA- -5'
26742 3' -62 NC_005808.1 + 13806 0.66 0.300798
Target:  5'- aGUuuGCGCGCC--UGuGCCUCcuGCCACUc -3'
miRNA:   3'- aCGu-CGCGCGGcuAC-CGGAG--CGGUGA- -5'
26742 3' -62 NC_005808.1 + 10894 0.66 0.300798
Target:  5'- cGCGGCGgGCUGGUcaGGCggUGCUGCa -3'
miRNA:   3'- aCGUCGCgCGGCUA--CCGgaGCGGUGa -5'
26742 3' -62 NC_005808.1 + 17416 0.66 0.29349
Target:  5'- aGCGGCGCccacGUCGcccuugagcaGUGGCCcCGCCAg- -3'
miRNA:   3'- aCGUCGCG----CGGC----------UACCGGaGCGGUga -5'
26742 3' -62 NC_005808.1 + 18388 0.66 0.29349
Target:  5'- uUGCcGaugGCGCCGGUGGCg--GCCACg -3'
miRNA:   3'- -ACGuCg--CGCGGCUACCGgagCGGUGa -5'
26742 3' -62 NC_005808.1 + 30424 0.66 0.29349
Target:  5'- gGCauGGCGaugaGCgCGGgcagGGCCUCGCC-CUg -3'
miRNA:   3'- aCG--UCGCg---CG-GCUa---CCGGAGCGGuGA- -5'
26742 3' -62 NC_005808.1 + 19356 0.66 0.287032
Target:  5'- gGCGGCGgaauUGCCGuugaggucggccagGGCCUUGuCCACUu -3'
miRNA:   3'- aCGUCGC----GCGGCua------------CCGGAGC-GGUGA- -5'
26742 3' -62 NC_005808.1 + 1142 0.66 0.286321
Target:  5'- aGCAGCG-GCCGuuuGCgCUCGCCGu- -3'
miRNA:   3'- aCGUCGCgCGGCuacCG-GAGCGGUga -5'
26742 3' -62 NC_005808.1 + 19779 0.66 0.286321
Target:  5'- gGCAGCGCGgCGAagucgGGCCagucCGgCACc -3'
miRNA:   3'- aCGUCGCGCgGCUa----CCGGa---GCgGUGa -5'
26742 3' -62 NC_005808.1 + 3755 0.66 0.286321
Target:  5'- gGCGGCacuucuCGCCGggGGCCUUGaguucgacCCACa -3'
miRNA:   3'- aCGUCGc-----GCGGCuaCCGGAGC--------GGUGa -5'
26742 3' -62 NC_005808.1 + 27290 0.66 0.286321
Target:  5'- cGCcGCGCGCCuuggcGAaGGCUUC-CCACg -3'
miRNA:   3'- aCGuCGCGCGG-----CUaCCGGAGcGGUGa -5'
26742 3' -62 NC_005808.1 + 14767 0.66 0.285612
Target:  5'- cGCAGCGUGUCGGUGucgaucuGCUUCacgauGUCGCUg -3'
miRNA:   3'- aCGUCGCGCGGCUAC-------CGGAG-----CGGUGA- -5'
26742 3' -62 NC_005808.1 + 19046 0.66 0.282086
Target:  5'- aGCGGC-CGCCGgcGGCgucgaucagcgugucCUCGCCGa- -3'
miRNA:   3'- aCGUCGcGCGGCuaCCG---------------GAGCGGUga -5'
26742 3' -62 NC_005808.1 + 25772 0.66 0.279291
Target:  5'- gGCGGCG-GCaaCGAUGGCCgcgaugcgCGCgGCg -3'
miRNA:   3'- aCGUCGCgCG--GCUACCGGa-------GCGgUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.