Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26743 | 3' | -51.8 | NC_005808.1 | + | 2732 | 0.7 | 0.617899 |
Target: 5'- aCGC-UUGaGCG-CGGcccggcGCUGCUCGGGCGu -3' miRNA: 3'- -GCGuAAC-CGCuGCU------UGACGAGCUUGC- -5' |
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26743 | 3' | -51.8 | NC_005808.1 | + | 4590 | 0.77 | 0.284655 |
Target: 5'- gCGCca-GGCGAgGAACUGCUCGGccucgGCGa -3' miRNA: 3'- -GCGuaaCCGCUgCUUGACGAGCU-----UGC- -5' |
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26743 | 3' | -51.8 | NC_005808.1 | + | 5352 | 0.67 | 0.773606 |
Target: 5'- uGuCGUUGGCGACagccAACaUGCUCGAcagguGCGu -3' miRNA: 3'- gC-GUAACCGCUGc---UUG-ACGAGCU-----UGC- -5' |
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26743 | 3' | -51.8 | NC_005808.1 | + | 5468 | 0.69 | 0.67487 |
Target: 5'- cCGCcg-GGCGGCGAGgUGUUgcCGAugGg -3' miRNA: 3'- -GCGuaaCCGCUGCUUgACGA--GCUugC- -5' |
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26743 | 3' | -51.8 | NC_005808.1 | + | 6747 | 0.72 | 0.478344 |
Target: 5'- gGCcUUGGCGccccacuuuuccuugGCGAcCUGCUCGAugGc -3' miRNA: 3'- gCGuAACCGC---------------UGCUuGACGAGCUugC- -5' |
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26743 | 3' | -51.8 | NC_005808.1 | + | 7539 | 0.66 | 0.813957 |
Target: 5'- gCGCuc-GGCGGCG---UGCUCGAucuGCGg -3' miRNA: 3'- -GCGuaaCCGCUGCuugACGAGCU---UGC- -5' |
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26743 | 3' | -51.8 | NC_005808.1 | + | 7617 | 0.66 | 0.850151 |
Target: 5'- uGCcgUGGUGAUGGucaggggGCgcgGCUCGAcccACGc -3' miRNA: 3'- gCGuaACCGCUGCU-------UGa--CGAGCU---UGC- -5' |
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26743 | 3' | -51.8 | NC_005808.1 | + | 7672 | 0.66 | 0.83202 |
Target: 5'- aCGCGccguucuUUGGCGGCGAuCUGCggccgguagcccUCGAAg- -3' miRNA: 3'- -GCGU-------AACCGCUGCUuGACG------------AGCUUgc -5' |
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26743 | 3' | -51.8 | NC_005808.1 | + | 7751 | 0.67 | 0.78396 |
Target: 5'- uGCuGUUGGCGACGAAggaauccagGCUCGcGCc -3' miRNA: 3'- gCG-UAACCGCUGCUUga-------CGAGCuUGc -5' |
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26743 | 3' | -51.8 | NC_005808.1 | + | 8530 | 0.7 | 0.62931 |
Target: 5'- gGCGUaGGCGAUGAAacGCUCGAcagccGCGc -3' miRNA: 3'- gCGUAaCCGCUGCUUgaCGAGCU-----UGC- -5' |
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26743 | 3' | -51.8 | NC_005808.1 | + | 9313 | 0.66 | 0.832949 |
Target: 5'- gGCGaccUGGCGGCGcACgucgGCgcggCGGGCGg -3' miRNA: 3'- gCGUa--ACCGCUGCuUGa---CGa---GCUUGC- -5' |
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26743 | 3' | -51.8 | NC_005808.1 | + | 9898 | 0.7 | 0.617899 |
Target: 5'- gCGCG-UGGCGAuguCGAGCUGCacuUCGAGg- -3' miRNA: 3'- -GCGUaACCGCU---GCUUGACG---AGCUUgc -5' |
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26743 | 3' | -51.8 | NC_005808.1 | + | 9902 | 0.76 | 0.307655 |
Target: 5'- uGCAcgcGGCGagcacgucgGCGAACUGCUCGGGCu -3' miRNA: 3'- gCGUaa-CCGC---------UGCUUGACGAGCUUGc -5' |
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26743 | 3' | -51.8 | NC_005808.1 | + | 10889 | 0.66 | 0.842109 |
Target: 5'- cCGCGc--GCGGCGGGCUGgUCaGGCGg -3' miRNA: 3'- -GCGUaacCGCUGCUUGACgAGcUUGC- -5' |
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26743 | 3' | -51.8 | NC_005808.1 | + | 11011 | 0.68 | 0.71973 |
Target: 5'- gCGUAUUGGCGuCGAugaacaccuGCUGCacCGGGCc -3' miRNA: 3'- -GCGUAACCGCuGCU---------UGACGa-GCUUGc -5' |
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26743 | 3' | -51.8 | NC_005808.1 | + | 11056 | 1.09 | 0.001713 |
Target: 5'- cCGCAUUGGCGACGAACUGCUCGAACGu -3' miRNA: 3'- -GCGUAACCGCUGCUUGACGAGCUUGC- -5' |
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26743 | 3' | -51.8 | NC_005808.1 | + | 11355 | 0.71 | 0.572489 |
Target: 5'- uGCAguacGGUGGCGAcCUGCUCGccCGg -3' miRNA: 3'- gCGUaa--CCGCUGCUuGACGAGCuuGC- -5' |
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26743 | 3' | -51.8 | NC_005808.1 | + | 11711 | 0.66 | 0.856268 |
Target: 5'- cCGC-UUGGCGAggucuuUGGACUGCgcaccccauugugCGAACu -3' miRNA: 3'- -GCGuAACCGCU------GCUUGACGa------------GCUUGc -5' |
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26743 | 3' | -51.8 | NC_005808.1 | + | 13024 | 0.71 | 0.561244 |
Target: 5'- gCGCAgUGGCGACGGccucgucaucGCguUGCUUGAguGCGg -3' miRNA: 3'- -GCGUaACCGCUGCU----------UG--ACGAGCU--UGC- -5' |
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26743 | 3' | -51.8 | NC_005808.1 | + | 15390 | 0.7 | 0.595127 |
Target: 5'- cCGCGUgcgGGcCGGCGAAgaUGC-CGGACGa -3' miRNA: 3'- -GCGUAa--CC-GCUGCUUg-ACGaGCUUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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