Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26743 | 3' | -51.8 | NC_005808.1 | + | 39514 | 0.66 | 0.842109 |
Target: 5'- cCGCGUgucgaagGGC-AUGggUgcgGCUCGGGCGc -3' miRNA: 3'- -GCGUAa------CCGcUGCuuGa--CGAGCUUGC- -5' |
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26743 | 3' | -51.8 | NC_005808.1 | + | 39332 | 0.67 | 0.788055 |
Target: 5'- gGCGUUGcGCGG-GAAauguuccugaagugcCUGCUCGGGCa -3' miRNA: 3'- gCGUAAC-CGCUgCUU---------------GACGAGCUUGc -5' |
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26743 | 3' | -51.8 | NC_005808.1 | + | 37343 | 0.69 | 0.679401 |
Target: 5'- aCGCAUUGcCGAccccgaccugccggcCGAACUGCgCGAACu -3' miRNA: 3'- -GCGUAACcGCU---------------GCUUGACGaGCUUGc -5' |
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26743 | 3' | -51.8 | NC_005808.1 | + | 35978 | 0.66 | 0.841203 |
Target: 5'- gCGCGaagcUGGCGGCGGACuacgccaUGCUCu-ACGu -3' miRNA: 3'- -GCGUa---ACCGCUGCUUG-------ACGAGcuUGC- -5' |
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26743 | 3' | -51.8 | NC_005808.1 | + | 34529 | 0.67 | 0.773606 |
Target: 5'- gCGCGccuugGGCGGUGAACUGauggUCGAGCa -3' miRNA: 3'- -GCGUaa---CCGCUGCUUGACg---AGCUUGc -5' |
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26743 | 3' | -51.8 | NC_005808.1 | + | 31919 | 0.66 | 0.851032 |
Target: 5'- uGCcugcGGCGuuuCGAgcGCUGCUCGAcACGc -3' miRNA: 3'- gCGuaa-CCGCu--GCU--UGACGAGCU-UGC- -5' |
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26743 | 3' | -51.8 | NC_005808.1 | + | 31452 | 0.72 | 0.526812 |
Target: 5'- gCGCA--GGCGGCccagcagcaggccGAACUGCUCGcACGu -3' miRNA: 3'- -GCGUaaCCGCUG-------------CUUGACGAGCuUGC- -5' |
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26743 | 3' | -51.8 | NC_005808.1 | + | 30424 | 0.67 | 0.804148 |
Target: 5'- gGCA-UGGCGAUGAGCg---CGGGCa -3' miRNA: 3'- gCGUaACCGCUGCUUGacgaGCUUGc -5' |
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26743 | 3' | -51.8 | NC_005808.1 | + | 29941 | 0.66 | 0.851032 |
Target: 5'- gCGCAUgaugGGCGACGAcccgAC-GCcaaaGGACGg -3' miRNA: 3'- -GCGUAa---CCGCUGCU----UGaCGag--CUUGC- -5' |
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26743 | 3' | -51.8 | NC_005808.1 | + | 29285 | 0.69 | 0.65213 |
Target: 5'- aCGUGguaGGCGACGAACUGCUgGc--- -3' miRNA: 3'- -GCGUaa-CCGCUGCUUGACGAgCuugc -5' |
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26743 | 3' | -51.8 | NC_005808.1 | + | 29258 | 0.66 | 0.842109 |
Target: 5'- gCGCGacUUcGGCGGCGAcCUGC-CGAAa- -3' miRNA: 3'- -GCGU--AA-CCGCUGCUuGACGaGCUUgc -5' |
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26743 | 3' | -51.8 | NC_005808.1 | + | 28053 | 0.79 | 0.206139 |
Target: 5'- -aCGUcGGCGACGGuCUGCUCGAACa -3' miRNA: 3'- gcGUAaCCGCUGCUuGACGAGCUUGc -5' |
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26743 | 3' | -51.8 | NC_005808.1 | + | 27836 | 0.71 | 0.571362 |
Target: 5'- cCGCggUGGCGcCGGccgcgccGCUGCUCaaGAACGu -3' miRNA: 3'- -GCGuaACCGCuGCU-------UGACGAG--CUUGC- -5' |
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26743 | 3' | -51.8 | NC_005808.1 | + | 26839 | 0.69 | 0.686181 |
Target: 5'- uCGCAccaUUGGCGgcaACGAGgUGCgguaugUCGAGCGc -3' miRNA: 3'- -GCGU---AACCGC---UGCUUgACG------AGCUUGC- -5' |
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26743 | 3' | -51.8 | NC_005808.1 | + | 26377 | 0.68 | 0.730743 |
Target: 5'- uGCAaucGCGcccuUGGACUGCUCGAACu -3' miRNA: 3'- gCGUaacCGCu---GCUUGACGAGCUUGc -5' |
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26743 | 3' | -51.8 | NC_005808.1 | + | 24831 | 0.72 | 0.47414 |
Target: 5'- uCGCGc--GCGACucGCUGCUCGAACu -3' miRNA: 3'- -GCGUaacCGCUGcuUGACGAGCUUGc -5' |
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26743 | 3' | -51.8 | NC_005808.1 | + | 24821 | 0.67 | 0.804148 |
Target: 5'- aGCAUcUGGCuGCGcAAUgGCUCGGGCa -3' miRNA: 3'- gCGUA-ACCGcUGC-UUGaCGAGCUUGc -5' |
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26743 | 3' | -51.8 | NC_005808.1 | + | 22483 | 0.66 | 0.851032 |
Target: 5'- gGCAUUcGaCGACGGugUGCU-GGGCGc -3' miRNA: 3'- gCGUAAcC-GCUGCUugACGAgCUUGC- -5' |
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26743 | 3' | -51.8 | NC_005808.1 | + | 21296 | 0.66 | 0.813957 |
Target: 5'- aGCGgucGGCGuCGAACUugUCGAGCa -3' miRNA: 3'- gCGUaa-CCGCuGCUUGAcgAGCUUGc -5' |
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26743 | 3' | -51.8 | NC_005808.1 | + | 19918 | 0.67 | 0.763095 |
Target: 5'- uCGCGcUGGgGGC-AACUGCgcacCGAGCGc -3' miRNA: 3'- -GCGUaACCgCUGcUUGACGa---GCUUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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