miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26743 3' -51.8 NC_005808.1 + 39514 0.66 0.842109
Target:  5'- cCGCGUgucgaagGGC-AUGggUgcgGCUCGGGCGc -3'
miRNA:   3'- -GCGUAa------CCGcUGCuuGa--CGAGCUUGC- -5'
26743 3' -51.8 NC_005808.1 + 26377 0.68 0.730743
Target:  5'- uGCAaucGCGcccuUGGACUGCUCGAACu -3'
miRNA:   3'- gCGUaacCGCu---GCUUGACGAGCUUGc -5'
26743 3' -51.8 NC_005808.1 + 5352 0.67 0.773606
Target:  5'- uGuCGUUGGCGACagccAACaUGCUCGAcagguGCGu -3'
miRNA:   3'- gC-GUAACCGCUGc---UUG-ACGAGCU-----UGC- -5'
26743 3' -51.8 NC_005808.1 + 34529 0.67 0.773606
Target:  5'- gCGCGccuugGGCGGUGAACUGauggUCGAGCa -3'
miRNA:   3'- -GCGUaa---CCGCUGCUUGACg---AGCUUGc -5'
26743 3' -51.8 NC_005808.1 + 24821 0.67 0.804148
Target:  5'- aGCAUcUGGCuGCGcAAUgGCUCGGGCa -3'
miRNA:   3'- gCGUA-ACCGcUGC-UUGaCGAGCUUGc -5'
26743 3' -51.8 NC_005808.1 + 30424 0.67 0.804148
Target:  5'- gGCA-UGGCGAUGAGCg---CGGGCa -3'
miRNA:   3'- gCGUaACCGCUGCUUGacgaGCUUGc -5'
26743 3' -51.8 NC_005808.1 + 21296 0.66 0.813957
Target:  5'- aGCGgucGGCGuCGAACUugUCGAGCa -3'
miRNA:   3'- gCGUaa-CCGCuGCUUGAcgAGCUUGc -5'
26743 3' -51.8 NC_005808.1 + 7672 0.66 0.83202
Target:  5'- aCGCGccguucuUUGGCGGCGAuCUGCggccgguagcccUCGAAg- -3'
miRNA:   3'- -GCGU-------AACCGCUGCUuGACG------------AGCUUgc -5'
26743 3' -51.8 NC_005808.1 + 9313 0.66 0.832949
Target:  5'- gGCGaccUGGCGGCGcACgucgGCgcggCGGGCGg -3'
miRNA:   3'- gCGUa--ACCGCUGCuUGa---CGa---GCUUGC- -5'
26743 3' -51.8 NC_005808.1 + 11011 0.68 0.71973
Target:  5'- gCGUAUUGGCGuCGAugaacaccuGCUGCacCGGGCc -3'
miRNA:   3'- -GCGUAACCGCuGCU---------UGACGa-GCUUGc -5'
26743 3' -51.8 NC_005808.1 + 37343 0.69 0.679401
Target:  5'- aCGCAUUGcCGAccccgaccugccggcCGAACUGCgCGAACu -3'
miRNA:   3'- -GCGUAACcGCU---------------GCUUGACGaGCUUGc -5'
26743 3' -51.8 NC_005808.1 + 5468 0.69 0.67487
Target:  5'- cCGCcg-GGCGGCGAGgUGUUgcCGAugGg -3'
miRNA:   3'- -GCGuaaCCGCUGCUUgACGA--GCUugC- -5'
26743 3' -51.8 NC_005808.1 + 28053 0.79 0.206139
Target:  5'- -aCGUcGGCGACGGuCUGCUCGAACa -3'
miRNA:   3'- gcGUAaCCGCUGCUuGACGAGCUUGc -5'
26743 3' -51.8 NC_005808.1 + 13024 0.71 0.561244
Target:  5'- gCGCAgUGGCGACGGccucgucaucGCguUGCUUGAguGCGg -3'
miRNA:   3'- -GCGUaACCGCUGCU----------UG--ACGAGCU--UGC- -5'
26743 3' -51.8 NC_005808.1 + 27836 0.71 0.571362
Target:  5'- cCGCggUGGCGcCGGccgcgccGCUGCUCaaGAACGu -3'
miRNA:   3'- -GCGuaACCGCuGCU-------UGACGAG--CUUGC- -5'
26743 3' -51.8 NC_005808.1 + 11355 0.71 0.572489
Target:  5'- uGCAguacGGUGGCGAcCUGCUCGccCGg -3'
miRNA:   3'- gCGUaa--CCGCUGCUuGACGAGCuuGC- -5'
26743 3' -51.8 NC_005808.1 + 17738 0.71 0.583786
Target:  5'- gCGCAuUUGGUGGCGAaaccccagguguGCaGUUCGAGCa -3'
miRNA:   3'- -GCGU-AACCGCUGCU------------UGaCGAGCUUGc -5'
26743 3' -51.8 NC_005808.1 + 15390 0.7 0.595127
Target:  5'- cCGCGUgcgGGcCGGCGAAgaUGC-CGGACGa -3'
miRNA:   3'- -GCGUAa--CC-GCUGCUUg-ACGaGCUUGC- -5'
26743 3' -51.8 NC_005808.1 + 9898 0.7 0.617899
Target:  5'- gCGCG-UGGCGAuguCGAGCUGCacuUCGAGg- -3'
miRNA:   3'- -GCGUaACCGCU---GCUUGACG---AGCUUgc -5'
26743 3' -51.8 NC_005808.1 + 29285 0.69 0.65213
Target:  5'- aCGUGguaGGCGACGAACUGCUgGc--- -3'
miRNA:   3'- -GCGUaa-CCGCUGCUUGACGAgCuugc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.