miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26743 3' -51.8 NC_005808.1 + 4590 0.77 0.284655
Target:  5'- gCGCca-GGCGAgGAACUGCUCGGccucgGCGa -3'
miRNA:   3'- -GCGuaaCCGCUgCUUGACGAGCU-----UGC- -5'
26743 3' -51.8 NC_005808.1 + 39332 0.67 0.788055
Target:  5'- gGCGUUGcGCGG-GAAauguuccugaagugcCUGCUCGGGCa -3'
miRNA:   3'- gCGUAAC-CGCUgCUU---------------GACGAGCUUGc -5'
26743 3' -51.8 NC_005808.1 + 26839 0.69 0.686181
Target:  5'- uCGCAccaUUGGCGgcaACGAGgUGCgguaugUCGAGCGc -3'
miRNA:   3'- -GCGU---AACCGC---UGCUUgACG------AGCUUGC- -5'
26743 3' -51.8 NC_005808.1 + 8530 0.7 0.62931
Target:  5'- gGCGUaGGCGAUGAAacGCUCGAcagccGCGc -3'
miRNA:   3'- gCGUAaCCGCUGCUUgaCGAGCU-----UGC- -5'
26743 3' -51.8 NC_005808.1 + 17530 0.71 0.550061
Target:  5'- gCGCug-GGUGGCGAuGCUGCcCGAugGu -3'
miRNA:   3'- -GCGuaaCCGCUGCU-UGACGaGCUugC- -5'
26743 3' -51.8 NC_005808.1 + 31452 0.72 0.526812
Target:  5'- gCGCA--GGCGGCccagcagcaggccGAACUGCUCGcACGu -3'
miRNA:   3'- -GCGUaaCCGCUG-------------CUUGACGAGCuUGC- -5'
26743 3' -51.8 NC_005808.1 + 29941 0.66 0.851032
Target:  5'- gCGCAUgaugGGCGACGAcccgAC-GCcaaaGGACGg -3'
miRNA:   3'- -GCGUAa---CCGCUGCU----UGaCGag--CUUGC- -5'
26743 3' -51.8 NC_005808.1 + 29258 0.66 0.842109
Target:  5'- gCGCGacUUcGGCGGCGAcCUGC-CGAAa- -3'
miRNA:   3'- -GCGU--AA-CCGCUGCUuGACGaGCUUgc -5'
26743 3' -51.8 NC_005808.1 + 7539 0.66 0.813957
Target:  5'- gCGCuc-GGCGGCG---UGCUCGAucuGCGg -3'
miRNA:   3'- -GCGuaaCCGCUGCuugACGAGCU---UGC- -5'
26743 3' -51.8 NC_005808.1 + 7751 0.67 0.78396
Target:  5'- uGCuGUUGGCGACGAAggaauccagGCUCGcGCc -3'
miRNA:   3'- gCG-UAACCGCUGCUUga-------CGAGCuUGc -5'
26743 3' -51.8 NC_005808.1 + 2732 0.7 0.617899
Target:  5'- aCGC-UUGaGCG-CGGcccggcGCUGCUCGGGCGu -3'
miRNA:   3'- -GCGuAAC-CGCuGCU------UGACGAGCUUGC- -5'
26743 3' -51.8 NC_005808.1 + 9902 0.76 0.307655
Target:  5'- uGCAcgcGGCGagcacgucgGCGAACUGCUCGGGCu -3'
miRNA:   3'- gCGUaa-CCGC---------UGCUUGACGAGCUUGc -5'
26743 3' -51.8 NC_005808.1 + 35978 0.66 0.841203
Target:  5'- gCGCGaagcUGGCGGCGGACuacgccaUGCUCu-ACGu -3'
miRNA:   3'- -GCGUa---ACCGCUGCUUG-------ACGAGcuUGC- -5'
26743 3' -51.8 NC_005808.1 + 24831 0.72 0.47414
Target:  5'- uCGCGc--GCGACucGCUGCUCGAACu -3'
miRNA:   3'- -GCGUaacCGCUGcuUGACGAGCUUGc -5'
26743 3' -51.8 NC_005808.1 + 19918 0.67 0.763095
Target:  5'- uCGCGcUGGgGGC-AACUGCgcacCGAGCGc -3'
miRNA:   3'- -GCGUaACCgCUGcUUGACGa---GCUUGC- -5'
26743 3' -51.8 NC_005808.1 + 10889 0.66 0.842109
Target:  5'- cCGCGc--GCGGCGGGCUGgUCaGGCGg -3'
miRNA:   3'- -GCGUaacCGCUGCUUGACgAGcUUGC- -5'
26743 3' -51.8 NC_005808.1 + 22483 0.66 0.851032
Target:  5'- gGCAUUcGaCGACGGugUGCU-GGGCGc -3'
miRNA:   3'- gCGUAAcC-GCUGCUugACGAgCUUGC- -5'
26743 3' -51.8 NC_005808.1 + 6747 0.72 0.478344
Target:  5'- gGCcUUGGCGccccacuuuuccuugGCGAcCUGCUCGAugGc -3'
miRNA:   3'- gCGuAACCGC---------------UGCUuGACGAGCUugC- -5'
26743 3' -51.8 NC_005808.1 + 19510 0.67 0.804148
Target:  5'- cCGcCGUUGGCGucgggGCGAGCaUGUacaugUCGAACa -3'
miRNA:   3'- -GC-GUAACCGC-----UGCUUG-ACG-----AGCUUGc -5'
26743 3' -51.8 NC_005808.1 + 34529 0.67 0.773606
Target:  5'- gCGCGccuugGGCGGUGAACUGauggUCGAGCa -3'
miRNA:   3'- -GCGUaa---CCGCUGCUUGACg---AGCUUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.