miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26743 5' -59.9 NC_005808.1 + 20024 0.66 0.411555
Target:  5'- gGCGCGCcugcaucacagGcAGCAUCUUGUCGagcaccaGUUGCGc -3'
miRNA:   3'- gCGCGCG-----------C-UCGUGGAACAGC-------CGACGC- -5'
26743 5' -59.9 NC_005808.1 + 8434 0.66 0.402398
Target:  5'- gGCGuCGCGgaacaucGGCGCgaUGUCGGCgucgagguggccUGCGa -3'
miRNA:   3'- gCGC-GCGC-------UCGUGgaACAGCCG------------ACGC- -5'
26743 5' -59.9 NC_005808.1 + 28648 0.66 0.394269
Target:  5'- cCGCGCGC-AGUGCCagaUCGGUgccgGCGg -3'
miRNA:   3'- -GCGCGCGcUCGUGGaacAGCCGa---CGC- -5'
26743 5' -59.9 NC_005808.1 + 36111 0.66 0.394269
Target:  5'- aGCGCGUGAauGCggGCCUgcgCGGCgUGCa -3'
miRNA:   3'- gCGCGCGCU--CG--UGGAacaGCCG-ACGc -5'
26743 5' -59.9 NC_005808.1 + 37213 0.66 0.388909
Target:  5'- gGCGaCGUGAGCACCgucagcacgcaccugUcgagcaUGUUGGCUGUc -3'
miRNA:   3'- gCGC-GCGCUCGUGG---------------A------ACAGCCGACGc -5'
26743 5' -59.9 NC_005808.1 + 14643 0.66 0.385362
Target:  5'- gGUGCGCaGAuugauaccuuGCACCUUGgccUGGgUGCGg -3'
miRNA:   3'- gCGCGCG-CU----------CGUGGAACa--GCCgACGC- -5'
26743 5' -59.9 NC_005808.1 + 19755 0.66 0.376588
Target:  5'- uCGCaGCGCGcGCugUcggcUGUCGGCaGCGc -3'
miRNA:   3'- -GCG-CGCGCuCGugGa---ACAGCCGaCGC- -5'
26743 5' -59.9 NC_005808.1 + 9905 0.66 0.376588
Target:  5'- aCGCG-GCGAGCAC---GUCGGCgaacUGCu -3'
miRNA:   3'- -GCGCgCGCUCGUGgaaCAGCCG----ACGc -5'
26743 5' -59.9 NC_005808.1 + 23743 0.67 0.367095
Target:  5'- gGCGCGCaGcAGCGCCaUGcCGGCgccaccgggccgaUGCGc -3'
miRNA:   3'- gCGCGCG-C-UCGUGGaACaGCCG-------------ACGC- -5'
26743 5' -59.9 NC_005808.1 + 22726 0.67 0.35945
Target:  5'- gGCGCGCGA-CGCCU--UCGGCacGCc -3'
miRNA:   3'- gCGCGCGCUcGUGGAacAGCCGa-CGc -5'
26743 5' -59.9 NC_005808.1 + 8999 0.67 0.35945
Target:  5'- cCGCGCGgGGGCGCUUccagcaGGCgGCGc -3'
miRNA:   3'- -GCGCGCgCUCGUGGAacag--CCGaCGC- -5'
26743 5' -59.9 NC_005808.1 + 1086 0.67 0.351088
Target:  5'- gGCGCGC--GUACUUcaUGUUGGCgGCGg -3'
miRNA:   3'- gCGCGCGcuCGUGGA--ACAGCCGaCGC- -5'
26743 5' -59.9 NC_005808.1 + 30275 0.67 0.351088
Target:  5'- gGuCGCGCGAGuCGCCggaaaacGUCGGguagcgcccCUGCGa -3'
miRNA:   3'- gC-GCGCGCUC-GUGGaa-----CAGCC---------GACGC- -5'
26743 5' -59.9 NC_005808.1 + 26049 0.67 0.351088
Target:  5'- cCGCGCgGCGGGCGCgCUccaUGcgcUCGGCgaacucgggGCGg -3'
miRNA:   3'- -GCGCG-CGCUCGUG-GA---AC---AGCCGa--------CGC- -5'
26743 5' -59.9 NC_005808.1 + 6720 0.67 0.342865
Target:  5'- gGCGCGCaucugcuuGAGCACggcGUCGGCcuugGCGc -3'
miRNA:   3'- gCGCGCG--------CUCGUGgaaCAGCCGa---CGC- -5'
26743 5' -59.9 NC_005808.1 + 9897 0.67 0.342865
Target:  5'- gGCGCGUG-GCGa--UGUCGaGCUGCa -3'
miRNA:   3'- gCGCGCGCuCGUggaACAGC-CGACGc -5'
26743 5' -59.9 NC_005808.1 + 1332 0.67 0.334781
Target:  5'- cCGacaaGCGCGAGgaaGCCgugGUCGGCgGCc -3'
miRNA:   3'- -GCg---CGCGCUCg--UGGaa-CAGCCGaCGc -5'
26743 5' -59.9 NC_005808.1 + 20070 0.67 0.334781
Target:  5'- aCGCGCGCGcuGCGCgUgcUCG-CUGCGg -3'
miRNA:   3'- -GCGCGCGCu-CGUGgAacAGCcGACGC- -5'
26743 5' -59.9 NC_005808.1 + 38217 0.68 0.303852
Target:  5'- gGCGCGaCG-GCGCCU----GGCUGCGc -3'
miRNA:   3'- gCGCGC-GCuCGUGGAacagCCGACGC- -5'
26743 5' -59.9 NC_005808.1 + 4206 0.68 0.296471
Target:  5'- gGC-CGCGAGCACgUcG-CGGCUuGCGg -3'
miRNA:   3'- gCGcGCGCUCGUGgAaCaGCCGA-CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.